RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_016385
Reference: OH-1004 Chr: Chr03 Coordinates: 120959945-120974281 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

9162 bp · LXL04_016385|LXL04_016385|OH1004|cDNA

ATGTCTCCTCCTCCTAGTATTGCTCATCAACCAGGTGAAGTTTGCCGGCTTCGAAAGGCTCTATATGGTCTCAAACAAGCCCCTCGTGCTTGGTTTGAGAAGTTTTCTACAGTGATTACTTCGCTTGGATTTCGAGCAAGTAATCATGATTCGGCTCTATTTGTTCGGTGTACGAGTGCAGGACGGATTATTCTTTccttatatgttgatgatatgattattactGGTGATGATCATGATGGTATAGAGTCTTTAAAACG...

CDS

Download CDS FASTA

9162 bp · LXL04_016385|LXL04_016385|OH1004|CDS

ATGTCTCCTCCTCCTAGTATTGCTCATCAACCAGGTGAAGTTTGCCGGCTTCGAAAGGCTCTATATGGTCTCAAACAAGCCCCTCGTGCTTGGTTTGAGAAGTTTTCTACAGTGATTACTTCGCTTGGATTTCGAGCAAGTAATCATGATTCGGCTCTATTTGTTCGGTGTACGAGTGCAGGACGGATTATTCTTTCCTTATATGTTGATGATATGATTATTACTGGTGATGATCATGATGGTATAGAGTCTTTAAAACG...

Protein

Download Protein FASTA

3053 aa · LXL04_016385|LXL04_016385|OH1004|PROTEIN

MSPPPSIAHQPGEVCRLRKALYGLKQAPRAWFEKFSTVITSLGFRASNHDSALFVRCTSAGRIILSLYVDDMIITGDDHDGIESLKRDLAIRFAMKDLGLLRYFLGIEVAHSPKGYLLSQTKYISDLFERARLTDNRTTDTPIESNAKYSPTDGVPLSDPSLYRTIVGSLVYLTVIRPDIAHADHVVSQFVTAPSSVHWGAVLRILRYLRGTQFRTLAFPSTSSLELRVYSDANWDIDIYDRKSTAGYCVFLMDSLISWK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_016385
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_016385
LocationChr03:120959945-120974281 (-)
DescriptionSimilar to KIN14N: Kinesin-like protein KIN-14N
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g54670 Kinesin-like protein KIN-14N. No verified direct reference in this release
At4g27180 Kinesin-like protein KIN-14M. No verified direct reference in this release
At4g21270 Kinesin that supports microtubule movement in an ATP- dependent manner and has a minus-end directed polarity.
The Arabidopsis ATK1 gene is required for spindle morphogenesis in male meiosis.2002 · DOI: 10.1242/dev.129.10.2401
Arabidopsis thaliana protein, ATK1, is a minus-end directed kinesin that exhibits non-processive movement.2002 · DOI: 10.1002/cm.10045
At4g05190 Kinesin that supports microtubule movement in an ATP- dependent manner and that functions as a minus-end directed motor as well as a plus-end tracking protein.
A minus-end-directed kinesin with plus-end tracking protein activity is involved in spindle morphogenesis.2005 · DOI: 10.1091/mbc.e04-10-0935
The kinesin ATK5 functions in early spindle assembly in Arabidopsis.2007 · DOI: 10.1105/tpc.106.047613

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0105700 Kinesin-like protein KIN-14N. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016385 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0007018 microtubule-based movement Biological Process
GO:0009971 anastral spindle assembly involved in male meiosis Biological Process
GO:0051225 spindle assembly Biological Process
GO:0051301 cell division Biological Process
GO:0000776 kinetochore Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005819 spindle Cellular Component
GO:0005871 kinesin complex Cellular Component
GO:0005872 minus-end kinesin complex Cellular Component
KEGG gene cross-reference
ath:AT4G05190
ath:AT4G21270
ath:AT4G27180
ath:AT5G54670
dosa:Os07g0105700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.667
Rank 1 · LXL04_016385 · OH-1004
Nucleus0.299
Rank 2 · LXL04_016385 · OH-1004
Mitochondrion0.112
Rank 3 · LXL04_016385 · OH-1004
Cell membrane0.074
Rank 4 · LXL04_016385 · OH-1004
Endoplasmic reticulum0.045
Rank 5 · LXL04_016385 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07727.20RVT_23-144 aa
PF16796.12Microtub_bd761-924 aa
PF00225.30Kinesin784-1095 aa
PF09353.16DUF19951130-1363 aa
PF03732.25PEG10_N-capsid1611-1680 aa
PF00078.33RVT_12141-2198 aa
PF00078.33RVT_12195-2263 aa
PF17917.8RT_RNaseH2351-2435 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_016385PF07727.20RVT_231441.1e-40140.5
LXL04_016385PF16796.12Microtub_bd7619242.3e-52177.7
LXL04_016385PF00225.30Kinesin78410955.3e-104348.5
LXL04_016385PF09353.16DUF1995113013631.1e-38133.9
LXL04_016385PF03732.25PEG10_N-capsid161116801.6e-0629.1
LXL04_016385PF00078.33RVT_1214121982.7e-1764.1
LXL04_016385PF00078.33RVT_1219522632.7e-1764.1
LXL04_016385PF17917.8RT_RNaseH235124352.9e-1660.2
LXL04_016385PF17919.8RT_RNaseH_2235124065.5e-1039.9
LXL04_016385PF13456.13RVT_3248826052.8e-1866.7
LXL04_016385PF17921.8Integrase_H2C2269727511.2e-0938.9
LXL04_016385PF00665.33rve277328661.1e-1352.0
LXL04_016385PF29688.1TnsB_C282828863.4e-0627.6
LXL04_016385PF31073.1DUF8803299030525.3e-2484.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P46875Arabidopsis thalianaKinesin-like protein KIN-14N59.605%Swiss-Protweak database homology
P46864Arabidopsis thalianaKinesin-like protein KIN-14M61.396%Swiss-Protweak database homology
Q07970Arabidopsis thalianaKinesin-like protein KIN-14C59.147%Swiss-Protweak database homology
F4JGP4Arabidopsis thalianaKinesin-like protein KIN-14D58.184%Swiss-Protweak database homology
A3BFT0Oryza sativa subsp. japonicaKinesin-like protein KIN-14N57.787%Swiss-Protweak database homology

JBrowse

View in Genome Browser