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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G134240
Reference: TK1151 Chr: Chr02 Coordinates: 34685050-34686405 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

939 bp · TkA02G134240|TK1151|cDNA

CATCCACCTACACACCACCACCCAATTATCTAATCCTATTAACTGAAACCAACAGCCATCCACACACAGACACACACCACATTCTCCATAATTTTCTCTTTTGATCGATCGGTTGTTTATAGATCAGTAGATGGCTGGTGTGCTCGAGATTCTTACTGTTCCTCGTGCTTCCGCCTTTCCGGCGGCGTCTTTGACTCCGATCGTCTCTGCTCCTGTTTCTCGGCTCTCTCATCGCCGGTATATTACAAAATTGCCGGAAT...

CDS

Download CDS FASTA

555 bp · TkA02G134240|TK1151|CDS

ATGGCTGGTGTGCTCGAGATTCTTACTGTTCCTCGTGCTTCCGCCTTTCCGGCGGCGTCTTTGACTCCGATCGTCTCTGCTCCTGTTTCTCGGCTCTCTCATCGCCGGTATATTACAAAATTGCCGGAATCAAGAGGTTTGAGAATCCAGTCGTACGGTTCTTCTGGATCGGTGAGCTTAAGGTCTAAATCTGTCCGCCGTGGAGCACGTATCGTATGCGAGGCTCAAGAAGCCGTCGAAGTTCTTCCAGTCACGGATGC...

Protein

Download Protein FASTA

184 aa · TkA02G134240|TK1151|PROTEIN

MAGVLEILTVPRASAFPAASLTPIVSAPVSRLSHRRYITKLPESRGLRIQSYGSSGSVSLRSKSVRRGARIVCEAQEAVEVLPVTDATWQSQVLECGLPVLVEFWAPWCGPCRMIHPVIDELAKEYSGKLTCYKVNTDESPSIASRYGIRSIPTVIIFKDGEKKDAVIGAVPKSTLSTCIEKFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G134240
TK1151 IDTkA02G134240
OH-1004 IDLXL04_016494
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G134240
LocationChr02:34685050-34686405 (+)
DescriptionSimilar to At3g15360: Thioredoxin M4, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g15360 Thiol-disulfide oxidoreductase involved in the redox regulation of enzyme of the oxidative pentose phosphate pathway. No verified direct reference in this release
At1g03680 Thiol-disulfide oxidoreductase involved in the redox regulation of enzymes of both reductive pentose phosphate pathway (Calvin-Benson cycle) and oxidative pentose phosphate pathway. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os04g0530600 Probable thiol-disulfide oxidoreductase that may be involved in the redox regulation of chloroplastic enzymes. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016494 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006109 regulation of carbohydrate metabolic process Biological Process
GO:0009409 response to cold Biological Process
GO:0043085 positive regulation of catalytic activity Biological Process
GO:0043086 negative regulation of catalytic activity Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009570 chloroplast stroma Cellular Component
GO:0009579 thylakoid Cellular Component
KEGG gene cross-reference
ath:AT1G03680
ath:AT3G15360
dosa:Os02g0639900
dosa:Os04g0530600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.983
Rank 1 · TkA02G134240 · TK1151
Mitochondrion0.025
Rank 2 · TkA02G134240 · TK1151
Nucleus0.017
Rank 3 · TkA02G134240 · TK1151
Cytoplasm0.013
Rank 4 · TkA02G134240 · TK1151
Cell membrane0.010
Rank 5 · TkA02G134240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00085Thioredoxin81-181 aa
PF13098Thioredoxin_294-183 aa
PF13899Thioredoxin_795-119 aa
PF00578AhpC-TSA97-143 aa
PF08534Redoxin98-139 aa
PF13905Thioredoxin_899-133 aa
PF13728TraF102-170 aa
PF14595Thioredoxin_9104-174 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G134240PF00085Thioredoxin811811.3e-30106.2
TkA02G134240PF13098Thioredoxin_2941836.6e-0936.8
TkA02G134240PF13899Thioredoxin_7951190.08913.6
TkA02G134240PF00578AhpC-TSA971430.01316.2
TkA02G134240PF08534Redoxin981390.0006620.2
TkA02G134240PF13905Thioredoxin_8991339.6e-0626.6
TkA02G134240PF13728TraF1021700.0002621.6
TkA02G134240PF14595Thioredoxin_91041741.7e-0628.7
TkA02G134240PF20207PedC-like1061660.003118.2
TkA02G134240PF13192Thioredoxin_31071570.0005320.7
TkA02G134240PF04756OST3_OST61091640.00517.0
TkA02G134240PF07449HyaE1181650.0002321.9
TkA02G134240PF13848Thioredoxin_61211650.4211.2
TkA02G134240PF13905Thioredoxin_81311599.6e-0626.6
TkA02G134240PF08534Redoxin1331600.0006620.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SEU6Arabidopsis thalianasp|Q9SEU6|TRXM4_ARATH Thioredoxin M4, chloroplastic52.900%Swiss-ProtHigh
O48737Arabidopsis thalianasp|O48737|TRXM1_ARATH Thioredoxin M1, chloroplastic52.500%Swiss-ProtHigh
Q7X8R5Oryza sativa subsp. japonicasp|Q7X8R5|TRXM2_ORYSJ Thioredoxin M2, chloroplastic54.800%Swiss-ProtHigh

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