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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G128840
Reference: TK1151 Chr: Chr02 Coordinates: 33395961-33399686 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2179 bp · TkA02G128840|TK1151|cDNA

TATATACACACAATCGGTAGACGTCCGACCTCCTTCTCTCTCTACCCTACTCCCTCTCTCTTCCTAACCCCAAACTCCCAAAAGCACAGAGATCTATCAACCCTCGCTGACCATCTTGTATCTCGATCAGGGATGCTTTTCACCCAAATCAACCTTCACTTGTAATCCATCTTCTGTTCTTTCGATTTCCGGGTTCCTGGAGTTTCAAAGCTAATTCAAGTTACTATATCTTGAAGAAATCATGGGTATTGATGGCGAGT...

CDS

Download CDS FASTA

1845 bp · TkA02G128840|TK1151|CDS

ATGGGTATTGATGGCGAGTCTGATGTGGCCCATGTGTCCGTTGAAAATGGGAAGAAAGAGAGCAGTATCAATGGCCATGTTGCTGAAAACGAATCTGTTACAGTTGCAAAAGATTCAGTTCGTGTAGAACCAACAGCTGAAATGAGCTTTCCAAACAATGCAGTTGATGAATGGCCAGAAGCTAAAAAGTTTCACTCTGTTTACTTTGTTAAATACCGAACAGTTGAAGACCAAAACCTCAAAACTAAACTCGATCAGGC...

Protein

Download Protein FASTA

614 aa · TkA02G128840|TK1151|PROTEIN

MGIDGESDVAHVSVENGKKESSINGHVAENESVTVAKDSVRVEPTAEMSFPNNAVDEWPEAKKFHSVYFVKYRTVEDQNLKTKLDQADKELKKLNLSRDPILEKLRAKRTERAQVIGQLKALVEEKNHFRSIMDDKRKEIEPLQQALGKLRGPRDANRDNRSFICSSEAELNDVIKSMQYRIQHESITLNEEKQIIREIKQLEGTRDKVIANAAMRAEVQKSVGEKDAIQDQVKSIGVDLDGVRKDQQAIKTKVKTLEVE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G128840
TK1151 IDTkA02G128840
OH-1004 IDLXL04_016524
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)97.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G128840
LocationChr02:33395961-33399686 (-)
DescriptionSimilar to PPI1: Proton pump-interactor 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27500 Promotes AHA1 plasma membrane ATPase activity by binding to a site different from the 14-3-3 binding site. No verified direct reference in this release
At3g15340 May regulate plasma membrane ATPase activity. No verified direct reference in this release
At1g53110 May regulate plasma membrane ATPase activity. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0346400 May regulate plasma membrane ATPase activity. No verified direct reference in this release
Os08g0390000 May regulate plasma membrane ATPase activity. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010155 regulation of proton transport Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT3G15340
ath:AT4G27500
ath:AT5G36690
ath:AT5G36780
dosa:Os08g0390000
dosa:Os09g0346400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.458
Rank 1 · TkA02G128840 · TK1151
Nucleus0.210
Rank 2 · TkA02G128840 · TK1151
Cell membrane0.170
Rank 3 · TkA02G128840 · TK1151
Endoplasmic reticulum0.163
Rank 4 · TkA02G128840 · TK1151
Golgi apparatus0.099
Rank 5 · TkA02G128840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28572PPI_helical64-371 aa
PF27636CCPG1_N75-151 aa
PF09716ETRAMP76-94 aa
PF30554Bfr179-308 aa
PF27883PPI_C104-114 aa
PF27636CCPG1_N166-296 aa
PF01220DHquinase_II170-231 aa
PF27883PPI_C212-218 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G128840PF28572PPI_helical643711.5e-59202.6
TkA02G128840PF27636CCPG1_N751510.03315.5
TkA02G128840PF09716ETRAMP76940.05414.2
TkA02G128840PF30554Bfr1793083.3e-0524.0
TkA02G128840PF27883PPI_C1041142.7e-1040.9
TkA02G128840PF27636CCPG1_N1662960.03315.5
TkA02G128840PF01220DHquinase_II1702310.01815.5
TkA02G128840PF27883PPI_C2122182.7e-1040.9
TkA02G128840PF09716ETRAMP2602830.05414.2
TkA02G128840PF28572PPI_helical4544851.5e-59202.6
TkA02G128840PF27636CCPG1_N4575130.03315.5
TkA02G128840PF27883PPI_C4675022.7e-1040.9
TkA02G128840PF30554Bfr14735703.3e-0524.0
TkA02G128840PF09716ETRAMP4895120.05414.2
TkA02G128840PF27883PPI_C5055142.7e-1040.9
TkA02G128840PF27883PPI_C5365402.7e-1040.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O23144Arabidopsis thalianasp|O23144|PPI1_ARATH Proton pump-interactor 149.700%Swiss-ProtMedium
B3H4K7Arabidopsis thalianasp|B3H4K7|PPI2_ARATH Proton pump-interactor 233.800%Swiss-ProtMedium
Q8VZN4Arabidopsis thalianasp|Q8VZN4|PPI4_ARATH Proton pump-interactor 436.400%Swiss-ProtLow
Q762B4Oryza sativa subsp. japonicasp|Q762B4|BP103_ORYSJ Proton pump-interactor BIP10346.800%Swiss-ProtMedium
Q6ZBF6Oryza sativa subsp. japonicasp|Q6ZBF6|BP131_ORYSJ Proton pump-interactor BIP13145.000%Swiss-ProtMedium

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