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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G122330
Reference: TK1151 Chr: Chr02 Coordinates: 31759389-31762002 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1112 bp · TkA02G122330|TK1151|cDNA

TTTCAAAGTCATGAATAAAAATCAAGAATCAAAGCATTTATGAGTTTAATCTTCAATTTCGAAACGCGTCCCCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGAATCTTGTCGACACAATTTAGTGATCTTCAATAAACCCAAAGACGAACTGATAATCGTAAAGTGGAGTAATATCATCTCAATTGTCCATTAGGTACCGAATTTCGAAGATAAGTTTACATTATTGTATCTAATCATGGCGGCTTATA...

CDS

Download CDS FASTA

654 bp · TkA02G122330|TK1151|CDS

ATGGCGGCTTATAGAGCCGACGATGACTACGATTATCTGTTCAAGTTAGTTCTGATCGGAGACTCTGGAGTCGGTAAATCGAATTTGCTTTCTAGATTTGCTAAGAACGAGTTCAATCTTGAATCAAAGTCAACTATCGGCGTCGAATTCGCTACCAGAAGTATTCGTGTTGATGACAAAATTGTCAAAGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGAGCAATCACAAGCGCGTACTACCGTGGCGCAGT...

Protein

Download Protein FASTA

217 aa · TkA02G122330|TK1151|PROTEIN

MAAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFAKNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDTSRHVTFENVERWLKELRDHTDSNIVIMLVGNKSDLRHLRAVPTEEARAFAEKENTYFMETSALEALNVETAFTEVLTQIHHVVSRKAIDAGDDPAGLPKGQTISVGSKDDVSAVKKVGCCSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G122330
TK1151 IDTkA02G122330
OH-1004 IDLXL04_015695
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)88.400
Protein coverage (%)TK1151 99.539 / OH-1004 99.539
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G122330
LocationChr02:31759389-31762002 (+)
DescriptionSimilar to RABA1F: Ras-related protein RABA1f
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g60860 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At3g15060 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At4g18430 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release
At1g28550 Intracellular vesicle trafficking and protein transport. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015695 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0042546 cell wall biogenesis Biological Process
GO:0005768 endosome Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT1G28550
ath:AT3G15060
ath:AT4G18430
ath:AT5G60860
nta:107770722
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.469
Rank 1 · TkA02G122330 · TK1151
Golgi apparatus0.373
Rank 2 · TkA02G122330 · TK1151
Cell membrane0.247
Rank 3 · TkA02G122330 · TK1151
Lysosome / Vacuole0.190
Rank 4 · TkA02G122330 · TK1151
Endoplasmic reticulum0.130
Rank 5 · TkA02G122330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf14-144 aa
PF00071Ras15-175 aa
PF08477Roc15-129 aa
PF05621TniB15-37 aa
PF04670Gtr1_RagA15-130 aa
PF01926MMR_HSR116-121 aa
PF03193RsgA_GTPase16-36 aa
PF13401AAA_2216-131 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G122330PF00025Arf141445e-1246.4
TkA02G122330PF00071Ras151759.1e-63211.4
TkA02G122330PF08477Roc151292.9e-35121.8
TkA02G122330PF05621TniB15370.03614.3
TkA02G122330PF04670Gtr1_RagA151300.04913.8
TkA02G122330PF01926MMR_HSR1161216e-0627.1
TkA02G122330PF03193RsgA_GTPase16360.0005920.4
TkA02G122330PF13401AAA_22161310.001619.5
TkA02G122330PF13191AAA_1616360.03515.3
TkA02G122330PF13173AAA_14161260.04114.6
TkA02G122330PF00005ABC_tran16390.04315.1
TkA02G122330PF03266NTPase_1161080.1213.0
TkA02G122330PF07728AAA_516350.1412.9
TkA02G122330PF13238AAA_18171210.0814.1
TkA02G122330PF13304AAA_2117310.2611.9
TkA02G122330PF00009GTP_EFTU391729.1e-0626.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJH0Arabidopsis thalianasp|Q9FJH0|RAA1F_ARATH Ras-related protein RABA1f88.000%Swiss-ProtHigh
Q9LK99Arabidopsis thalianasp|Q9LK99|RAA1G_ARATH Ras-related protein RABA1g85.200%Swiss-ProtHigh
O49513Arabidopsis thalianasp|O49513|RAA1E_ARATH Ras-related protein RABA1e81.500%Swiss-ProtHigh
Q9S810Arabidopsis thalianasp|Q9S810|RAA1I_ARATH Ras-related protein RABA1i81.700%Swiss-ProtHigh

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