LXL04_015695 | RubberDandelionOmics

Gene overview

LXL04_015695

Reference: OH-1004 Chr: Chr03 Coordinates: 80552563-80553403 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

654 bp · LXL04_015695|LXL04_015695|OH1004|cDNA

ATGGCGGCGTATAGAGCTGACGATGACTACGATTATCTGTTCAAAGTCGTTCTGATCGGAGACTCCGGTGTCGGCAAGTCTAACTTGCTTTCCAGGTTCACCAGGAACGAGTTCAGTCTTGAATCTAAGTCAACAATCGGTGTTGAGTTCGCCACCAGAAGTATTCGCGTTGATGACAAGATCATCAAGGCTCAGATTTGGGATACTGCCGGCCAAGAAAGGTACCGTGCAATCACGAGTGCGTACTACAGAGGAGCAGT...

CDS

Download CDS FASTA

654 bp · LXL04_015695|LXL04_015695|OH1004|CDS

ATGGCGGCGTATAGAGCTGACGATGACTACGATTATCTGTTCAAAGTCGTTCTGATCGGAGACTCCGGTGTCGGCAAGTCTAACTTGCTTTCCAGGTTCACCAGGAACGAGTTCAGTCTTGAATCTAAGTCAACAATCGGTGTTGAGTTCGCCACCAGAAGTATTCGCGTTGATGACAAGATCATCAAGGCTCAGATTTGGGATACTGCCGGCCAAGAAAGGTACCGTGCAATCACGAGTGCGTACTACAGAGGAGCAGT...

Protein

Download Protein FASTA

217 aa · LXL04_015695|LXL04_015695|OH1004|PROTEIN

MAAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKIIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDTTRHVTFENVERWLKELRDHSDSNIVIMLVGNKADLRHLRAVSTEDAKTFAEKEKTYFMETSALEATNVEDSFTEVLTQIYHVVSRKALDIGNDTGSLPKGQTINVGSKDDVSAVKKVGCCSN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015695`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015695

Location Chr03:80552563-80553403 (-)

Description Similar to RABA1F: Ras-related protein RABA1f

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g60860`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At3g15060`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At4g18430`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release
`At1g28550`	Intracellular vesicle trafficking and protein transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015695 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0005768 endosome Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0003924 GTPase activity Molecular Function

GO:0005525 GTP binding Molecular Function

KEGG gene cross-reference

ath:AT1G28550

ath:AT3G15060

ath:AT4G18430

ath:AT5G60860

nta:107770722

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.460

Rank 1 · LXL04_015695 · OH-1004

Golgi apparatus0.379

Rank 2 · LXL04_015695 · OH-1004

Cell membrane0.221

Rank 3 · LXL04_015695 · OH-1004

Lysosome / Vacuole0.207

Rank 4 · LXL04_015695 · OH-1004

Endoplasmic reticulum0.132

Rank 5 · LXL04_015695 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025.28Arf14-167 aa

PF00071.29Ras15-175 aa

PF08477.20Roc15-129 aa

PF01926.30MMR_HSR115-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015695	`PF00025.28`	Arf	14	167	2e-12	47.6
LXL04_015695	`PF00071.29`	Ras	15	175	6.4e-63	211.9
LXL04_015695	`PF08477.20`	Roc	15	129	1.5e-35	122.7
LXL04_015695	`PF01926.30`	MMR_HSR1	15	121	7.1e-07	30.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJH0`	Arabidopsis thaliana	Ras-related protein RABA1f	89.862%	Swiss-Prot	strong database homology
`Q9LK99`	Arabidopsis thaliana	Ras-related protein RABA1g	87.097%	Swiss-Prot	strong database homology
`O49513`	Arabidopsis thaliana	Ras-related protein RABA1e	81.944%	Swiss-Prot	strong database homology
`Q9S810`	Arabidopsis thaliana	Ras-related protein RABA1i	82.488%	Swiss-Prot	strong database homology

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