TkA02G121890 | RubberDandelionOmics

Gene overview

TkA02G121890

Reference: TK1151 Chr: Chr02 Coordinates: 31663681-31666774 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2709 bp · TkA02G121890|TK1151|cDNA

ATGAAGAAATTCCAGTCTCTCAAGAAGAAAATCTCTGCTTGGGCCGGTAAAAACAGAATGCAAAAGGATGTGAAAAAGAATGAGTGTGTGAAAATTATAAACGAGGTGGAAGGATTGATGGACGAGAGAAAAGCGGAGGAGGAAGACCTCAAGAGAAGGGAAGAAGCTATAGAGGAGATATGGAAAATAGAAAACAAAGAGAGAAACGACATCAAACAAATAAACAAAAATAAATGGTGTTTAGAAGGAGATGAAAACAC...

CDS

Download CDS FASTA

2709 bp · TkA02G121890|TK1151|CDS

ATGAAGAAATTCCAGTCTCTCAAGAAGAAAATCTCTGCTTGGGCCGGTAAAAACAGAATGCAAAAGGATGTGAAAAAGAATGAGTGTGTGAAAATTATAAACGAGGTGGAAGGATTGATGGACGAGAGAAAAGCGGAGGAGGAAGACCTCAAGAGAAGGGAAGAAGCTATAGAGGAGATATGGAAAATAGAAAACAAAGAGAGAAACGACATCAAACAAATAAACAAAAATAAATGGTGTTTAGAAGGAGATGAAAACAC...

Protein

Download Protein FASTA

902 aa · TkA02G121890|TK1151|PROTEIN

MKKFQSLKKKISAWAGKNRMQKDVKKNECVKIINEVEGLMDERKAEEEDLKRREEAIEEIWKIENKERNDIKQINKNKWCLEGDENTKMFHRCLNKKKRKRNVKDRFKENRDINWEQDFSGIKRLDSDQSSSLERDFDEEEIKKAIWNCGEHKSPGRDGFNIEFIKRMWHIVGTDITSAIKEFGKKACIPRGVNAALLALIPKKLDAVTVDDFRPISLVGVLYKIIAKILATRIKSVLNHVISPTQSAFVKDRQILDGPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G121890`
TK1151 ID	TkA02G121890
OH-1004 ID	LXL04_017396
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.000
Protein coverage (%)	TK1151 65.965 / OH-1004 35.689 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA02G121890`
Location	Chr02:31663681-31666774 (+)
Description	Similar to FPP7: Filament-like plant protein 7
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_017396` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0010090 trichome morphogenesis Biological Process GO:0046785 microtubule polymerization Biological Process GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003824 catalytic activity Molecular Function GO:0008017 microtubule binding Molecular Function
KEGG gene cross-reference	ath:AT1G19835 ath:AT2G23360 ath:AT4G36120 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.585

Rank 1 · TkA02G121890 · TK1151

Nucleus0.309

Rank 2 · TkA02G121890 · TK1151

Cell membrane0.140

Rank 3 · TkA02G121890 · TK1151

Endoplasmic reticulum0.035

Rank 4 · TkA02G121890 · TK1151

Mitochondrion0.030

Rank 5 · TkA02G121890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00078RVT_1201-449 aa

PF13966zf-RVT304-338 aa

PF00078RVT_1581-607 aa

PF13966zf-RVT726-794 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G121890	`PF00078`	RVT_1	201	449	3.4e-33	115.9
TkA02G121890	`PF13966`	zf-RVT	304	338	7.5e-13	49.7
TkA02G121890	`PF00078`	RVT_1	581	607	3.4e-33	115.9
TkA02G121890	`PF13966`	zf-RVT	726	794	7.5e-13	49.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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