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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G110850
Reference: TK1151 Chr: Chr02 Coordinates: 29063601-29066762 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1139 bp · TkA02G110850|TK1151|cDNA

GAATATCACATCAAAAGGTCAACAGGTCAGACCCTGTGGTACCCTACGGCCTGACAAGAGGTTAAAATTCCTCCTTTAAAAGATTGCATTGGGTGTGCATTTAATGCAAAGGGAGTGATGCAATGTCCAAACTGTAGAAAAATTGAGAAAGGTCAATGGCTTTATGCAGATGGTGGGAGAGAGTTAACCATTGATGACTTTGTCAATGATGAAGATGTTTATGATCTCACTTTGTCTGAATCCTCTATCTGGTGCCCATA...

CDS

Download CDS FASTA

1089 bp · TkA02G110850|TK1151|CDS

ATGGGTTTGGAAGACGCGGATCGTGTAGATTATGGGGATGCTGCTGGACGGGGCAAAGCTGCTTCGTCCGTTTCATGTTCGATTTGCCTCGAGGATGTTACAGATTATGGGGATCGTGCTTGGGCGAAGCTCCATTGCGGTCATCAATTCCATCTCGATTGCATTGGGTGTGCATTTAATGCAAAGGGAGTGATGCAATGTCCAAACTGTAGAAAAATTGAGAAAGGTCAATGGCTTTATGCAGATGGTGGGAGAGAGTT...

Protein

Download Protein FASTA

362 aa · TkA02G110850|TK1151|PROTEIN

MGLEDADRVDYGDAAGRGKAASSVSCSICLEDVTDYGDRAWAKLHCGHQFHLDCIGCAFNAKGVMQCPNCRKIEKGQWLYADGGRELTIDDFVNDEDVYDLTLSESSIWCPYGAFTQLSAAFDEVEFPTTVYHDIGGQQHHNEHAASSTSISSHSHMCPYIAYFPPLSTTQGPISYNNNNNNNNNINNNNSNNQWNTQSVSNEIPNSYYNTLFPTPTTTHHHPGMPPRTNADISRSGPPYAHPLFPTQSSGSRPPSSSMT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G110850
TK1151 IDTkA02G110850
OH-1004 IDLXL04_038901
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)51.300
Protein coverage (%)TK1151 99.724 / OH-1004 99.764
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G110850
LocationChr02:29063601-29066762 (-)
DescriptionSimilar to RFI2: E3 ubiquitin-protein ligase RFI2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47700 Mediates phytochrome (phyA and phyB)-controlled seedling deetiolation responses such as hypocotyl elongation in response to red and far-red light. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0350900 Functions as an E3 ligase that promotes polyubiquitination of SPL14/IPA1 for subsequent proteasomal degradation.
Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice.2017 · DOI: 10.1105/tpc.16.00879
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038901 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007623 circadian rhythm Biological Process
GO:0009585 red, far-red light phototransduction Biological Process
GO:0009908 flower development Biological Process
GO:0010114 response to red light Biological Process
GO:0010218 response to far red light Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0010629 negative regulation of gene expression Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0048450 floral organ structural organization Biological Process
GO:0080050 regulation of seed development Biological Process
GO:0090227 regulation of red or far-red light signaling pathway Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
KEGG gene cross-reference
ath:AT2G47700
dosa:Os01g0350900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.589
Rank 1 · TkA02G110850 · TK1151
Cytoplasm0.441
Rank 2 · TkA02G110850 · TK1151
Cell membrane0.080
Rank 3 · TkA02G110850 · TK1151
Endoplasmic reticulum0.070
Rank 4 · TkA02G110850 · TK1151
Lysosome / Vacuole0.056
Rank 5 · TkA02G110850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15801zf-C6H218-32 aa
PF07282Cas12f1-like_TNB20-56 aa
PF29452FAR1_N23-72 aa
PF13920zf-C3HC4_324-72 aa
PF13639zf-RING_225-71 aa
PF17123zf-RING_1126-55 aa
PF13445zf-RING_UBOX26-68 aa
PF00097zf-C3HC426-70 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G110850PF15801zf-C6H218320.1512.9
TkA02G110850PF07282Cas12f1-like_TNB20561.79.6
TkA02G110850PF29452FAR1_N23720.02215.5
TkA02G110850PF13920zf-C3HC4_324720.04514.3
TkA02G110850PF13639zf-RING_225718.9e-0729.8
TkA02G110850PF17123zf-RING_1126555.7e-0729.8
TkA02G110850PF13445zf-RING_UBOX26686.4e-0523.6
TkA02G110850PF00097zf-C3HC426700.0003821.0
TkA02G110850PF13923zf-C3HC4_226700.007816.7
TkA02G110850PF23555zf-RING_Vps4126700.01415.7
TkA02G110850PF14570zf-RING_426720.01715.6
TkA02G110850PF14634zf-RING_526720.2712.0
TkA02G110850PF00628PHD26706.77.5
TkA02G110850PF08746zf-RING-like43700.5511.1
TkA02G110850PF12678zf-rbx144710.09313.7
TkA02G110850PF23011PHD-1st_NSD44710.4711.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O82239Arabidopsis thalianasp|O82239|RFI2_ARATH E3 ubiquitin-protein ligase RFI234.800%Swiss-ProtMedium
Q5Z8R1Oryza sativa subsp. japonicasp|Q5Z8R1|IPI1_ORYSJ E3 ubiquitin-protein ligase IPI149.700%Swiss-ProtLow

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