RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G106780
Reference: TK1151 Chr: Chr02 Coordinates: 27962557-27966804 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2833 bp · TkA02G106780|TK1151|cDNA

ACTTGAAAAGTTACAAACTCAAATTTAACACCCCTAAAACGCTGGACCGTAAATCGCCGGTCGCTAGCGAATCAAAGGCGTCGCCGTTACCATAGACTACACAACATCCGGTCTCTTTTCCATTATCACTACACCAACATCACCGAGCAATCCATTTGAAAATGAACGAAACCCTAGTTACGTCATCTGAACCACCACCATCAGACGGGGATCCAATGGATGTTGTAACCGAAGCTCATAACCCTAATGAGAACCAGTCT...

CDS

Download CDS FASTA

2343 bp · TkA02G106780|TK1151|CDS

ATGAACGAAACCCTAGTTACGTCATCTGAACCACCACCATCAGACGGGGATCCAATGGATGTTGTAACCGAAGCTCATAACCCTAATGAGAACCAGTCTGCCTCAAGTTCCGATTCCGACTCGGAGTCGGATGACGAAGCTCAAGTTGCACTCGAATTACAAAACCTAGAAACGGAGCTCGCCACAAACCCAGCCAACTACGATGCTCATGTTCAATATATAACGGCTCTGAGGAAGCAAGGGGATCTGGATAAGCTGCG...

Protein

Download Protein FASTA

780 aa · TkA02G106780|TK1151|PROTEIN

MNETLVTSSEPPPSDGDPMDVVTEAHNPNENQSASSSDSDSESDDEAQVALELQNLETELATNPANYDAHVQYITALRKQGDLDKLRLAREAMSELFPLTPAMWQQWGNDEISLISSSAHEGAIPAIEKLYERGVSDYTSVPLWLDYLNFLQKYDSSVSECSPSGISKARDLFERALTACGLHIAEGSKLWEAYRSYEEMILNTMDKTDSELREKQTQKIRSIFHRQLSIPHLDLKSTLLTYKAWESHHGNNLDVSPQVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G106780
TK1151 IDTkA02G106780
OH-1004 IDLXL04_016745
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.500
Protein coverage (%)TK1151 100.000 / OH-1004 99.751
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G106780
LocationChr02:27962557-27966804 (-)
DescriptionSimilar to sart3: Squamous cell carcinoma antigen recognized by T-cells 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016745 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000244 spliceosomal tri-snRNP complex assembly Biological Process
GO:0000245 spliceosomal complex assembly Biological Process
GO:0000387 spliceosomal snRNP assembly Biological Process
GO:0000398 mRNA splicing, via spliceosome Biological Process
GO:0000902 cell morphogenesis Biological Process
GO:0006334 nucleosome assembly Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008380 RNA splicing Biological Process
GO:0010468 regulation of gene expression Biological Process
GO:0048872 homeostasis of number of cells Biological Process
GO:0051252 regulation of RNA metabolic process Biological Process
GO:0061484 hematopoietic stem cell homeostasis Biological Process
KEGG gene cross-reference
cel:CELE_B0035.12
hsa:9733
mmu:53890
pon:100171719
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.875
Rank 1 · TkA02G106780 · TK1151
Cytoplasm0.195
Rank 2 · TkA02G106780 · TK1151
Mitochondrion0.026
Rank 3 · TkA02G106780 · TK1151
Cell membrane0.023
Rank 4 · TkA02G106780 · TK1151
Golgi apparatus0.015
Rank 5 · TkA02G106780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04889Cwf_Cwc_1524-68 aa
PF08640U3_assoc_652-90 aa
PF05843Suf53-557 aa
PF14559TPR_1954-85 aa
PF23240HAT_PRP39_N56-242 aa
PF23233HAT_Syf1_CNRKL1_N57-200 aa
PF25064ARM_TT21_5th58-89 aa
PF23241HAT_PRP39_C64-100 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G106780PF04889Cwf_Cwc_1524680.05414.0
TkA02G106780PF08640U3_assoc_652900.003817.8
TkA02G106780PF05843Suf535571.7e-30106.8
TkA02G106780PF14559TPR_1954850.0001422.8
TkA02G106780PF23240HAT_PRP39_N562424.4e-35122.0
TkA02G106780PF23233HAT_Syf1_CNRKL1_N572007.3e-2175.3
TkA02G106780PF25064ARM_TT21_5th58890.02615.5
TkA02G106780PF23241HAT_PRP39_C641009.5e-2381.5
TkA02G106780PF13428TPR_14691081e-1454.2
TkA02G106780PF23241HAT_PRP39_C1211799.5e-2381.5
TkA02G106780PF13428TPR_141221451e-1454.2
TkA02G106780PF23231HAT_Syf1_CNRKL1_C1292003.9e-1143.1
TkA02G106780PF29376PRP6_TPR1611951.3e-0524.8
TkA02G106780PF23220HAT_Syf1_M1662180.0003721.1
TkA02G106780PF08640U3_assoc_61662220.003817.8
TkA02G106780PF13428TPR_141671821e-1454.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser