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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G106080
Reference: TK1151 Chr: Chr02 Coordinates: 27794703-27798207 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2402 bp · TkA02G106080|TK1151|cDNA

TTATCGGATAAACTCGCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACATACAAACACACTCTCTCGAACAGCCATTGCTTCATTTGCCCGTATTTTATATGTGTTACAGACTTTGGAGAAAGAGTCAGATAAGCCATGTCCTCGATGTTGAGATGGAAATCCAAGATTCTCAGTAAGCATGTCCGAGCAATTTTCTTTTCATCATCGTCAAACTATCACCACCATACACCACTAAACCTC...

CDS

Download CDS FASTA

1866 bp · TkA02G106080|TK1151|CDS

ATGTCCTCGATGTTGAGATGGAAATCCAAGATTCTCAGTAAGCATGTCCGAGCAATTTTCTTTTCATCATCGTCAAACTATCACCACCATACACCACTAAACCTCCTCACACCCCCACCAAAACTACACCAATCAAACTATTTCAAGTTTCGATTTCTAGGGTTTCAACAAAATCGGAACAAATGGGAAGGAAGCTCCGACAAGTATGATCACATCAAAGCCCAAGTTAACTGCCCTAGATGTTCCCAGCTGATGACCCT...

Protein

Download Protein FASTA

621 aa · TkA02G106080|TK1151|PROTEIN

MSSMLRWKSKILSKHVRAIFFSSSSNYHHHTPLNLLTPPPKLHQSNYFKFRFLGFQQNRNKWEGSSDKYDHIKAQVNCPRCSQLMTLLFSNRPLSITSDTGIYHALNICRSCRTAYYFRPFKIDPLLQGSFIEIGRIRAGKEGDLGTISNDGDENKKVGAKMWEKLRSYGGGDTAHNPMADAGGGAVEEHQKRQDCGGGDEQRKNGWSDGSKSGIRLLTPKEICRGLNDFVIGQDQAKKVLSVAVHNHYKRIYHTSMDKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G106080
TK1151 IDTkA02G106080
OH-1004 IDLXL04_016740
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G106080
LocationChr02:27794703-27798207 (-)
DescriptionSimilar to CLPX2: CLP protease regulatory subunit CLPX2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g49840 ATP-dependent specificity component of the mitochondrial Clp protease. No verified direct reference in this release
At1g33360 ATP-dependent specificity component of the mitochondrial Clp protease. No verified direct reference in this release
At5g53350 ATP-dependent specificity component of the mitochondrial Clp protease. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016740 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0051301 cell division Biological Process
GO:0051603 proteolysis involved in protein catabolic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0009376 HslUV protease complex Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008233 peptidase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
GO:0046983 protein dimerization activity Molecular Function
GO:0051082 unfolded protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G33360
ath:AT5G49840
ath:AT5G53350
mes:Meso_1170
msl:Msil_2914
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.871
Rank 1 · TkA02G106080 · TK1151
Cytoplasm0.064
Rank 2 · TkA02G106080 · TK1151
Nucleus0.062
Rank 3 · TkA02G106080 · TK1151
Plastid0.059
Rank 4 · TkA02G106080 · TK1151
Cell membrane0.021
Rank 5 · TkA02G106080 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05876GpA_ATPase67-114 aa
PF01078Mg_chelatase231-246 aa
PF01695IstB_IS21252-296 aa
PF01580FtsK_SpoIIIE254-295 aa
PF02562PhoH263-296 aa
PF00158Sigma54_activat266-298 aa
PF14532Sigma54_activ_2267-355 aa
PF00437T2SSE267-300 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G106080PF05876GpA_ATPase671140.1112.9
TkA02G106080PF01078Mg_chelatase2312460.0001122.3
TkA02G106080PF01695IstB_IS212522960.002718.0
TkA02G106080PF01580FtsK_SpoIIIE2542950.2711.4
TkA02G106080PF02562PhoH2632960.1212.6
TkA02G106080PF00158Sigma54_activat2662980.0002921.3
TkA02G106080PF14532Sigma54_activ_22673550.001219.9
TkA02G106080PF00437T2SSE2673000.01714.5
TkA02G106080PF13555AAA_292692900.1113.0
TkA02G106080PF04851ResIII2702970.1712.5
TkA02G106080PF02367TsaE2723010.02615.2
TkA02G106080PF00493MCM2733570.0002121.2
TkA02G106080PF00270DEAD2732920.03514.6
TkA02G106080PF07724AAA_22744781.2e-31110.7
TkA02G106080PF12775AAA_72743490.01116.0
TkA02G106080PF20720nSTAND32742970.02814.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4K7F6Arabidopsis thalianasp|F4K7F6|CLPX2_ARATH CLP protease regulatory subunit CLPX2, mitochondrial58.900%Swiss-ProtHigh
Q66GN9Arabidopsis thalianasp|Q66GN9|CLPX3_ARATH CLP protease regulatory subunit CLPX3, mitochondrial57.000%Swiss-ProtHigh
Q9FK07Arabidopsis thalianasp|Q9FK07|CLPX1_ARATH CLP protease regulatory subunit CLPX1, mitochondrial72.000%Swiss-ProtMedium

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