LXL04_016740 | RubberDandelionOmics

Gene overview

LXL04_016740

Reference: OH-1004 Chr: Chr03 Coordinates: 132551727-132554882 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1984 bp · LXL04_016740|LXL04_016740|OH1004|cDNA

tctctctctctctctctctctcacacacacataCAAACACACTCTCTCGAACAGCCATTGCTTCATTTGCCCGTATTTTATATGTGTTACAGACTTTGGAGAAAGAGTCAGATAAGCCATGTCCTCGATGTTGAGATGGAAATCCAAGATTCTCAGTAAGCATGTCCGAGCAATTTTCTTTTCATCATCGTCAAACTATCACCACCATACACCACTAAACCTCCTCACACCCCCACCAAAACTACACCAATCAAACTATT...

CDS

Download CDS FASTA

1866 bp · LXL04_016740|LXL04_016740|OH1004|CDS

ATGTCCTCGATGTTGAGATGGAAATCCAAGATTCTCAGTAAGCATGTCCGAGCAATTTTCTTTTCATCATCGTCAAACTATCACCACCATACACCACTAAACCTCCTCACACCCCCACCAAAACTACACCAATCAAACTATTTCAAGTTTCGATTTCTAGGGTTTCAACAAAATCGGAACAAATGGGAAGGAAGCTCCGACAAGTATGATCACATCAAAGCCCAAGTTAACTGCCCTAGATGTTCCCAGCTGATGACCCT...

Protein

Download Protein FASTA

621 aa · LXL04_016740|LXL04_016740|OH1004|PROTEIN

MSSMLRWKSKILSKHVRAIFFSSSSNYHHHTPLNLLTPPPKLHQSNYFKFRFLGFQQNRNKWEGSSDKYDHIKAQVNCPRCSQLMTLLFSNRPLSITSDTGIYHALNICRSCRTAYYFRPFKIDPLLQGSFIEIGRIRAGKEGDLGTISNDGDENKKVGAKMWEKLRSYGGGDTADNPMADAGGGAVEEHQKRQDCGGGDEQRKNGWSDGSKSGIRLLTPKEICRGLNDFVIGQDQAKKVLSVAVHNHYKRIYHTSMDKD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016740`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_016740

Location Chr03:132551727-132554882 (+)

Description Similar to CLPX2: CLP protease regulatory subunit CLPX2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g49840`	ATP-dependent specificity component of the mitochondrial Clp protease.	No verified direct reference in this release
`At1g33360`	ATP-dependent specificity component of the mitochondrial Clp protease.	No verified direct reference in this release
`At5g53350`	ATP-dependent specificity component of the mitochondrial Clp protease.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016740 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0051301 cell division Biological Process

GO:0051603 proteolysis involved in protein catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005759 mitochondrial matrix Cellular Component

GO:0009376 HslUV protease complex Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0008233 peptidase activity Molecular Function

GO:0008270 zinc ion binding Molecular Function

GO:0016887 ATP hydrolysis activity Molecular Function

GO:0046983 protein dimerization activity Molecular Function

GO:0051082 unfolded protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G33360

ath:AT5G49840

ath:AT5G53350

mes:Meso_1170

msl:Msil_2914

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.868

Rank 1 · LXL04_016740 · OH-1004

Plastid0.064

Rank 2 · LXL04_016740 · OH-1004

Cytoplasm0.064

Rank 3 · LXL04_016740 · OH-1004

Nucleus0.062

Rank 4 · LXL04_016740 · OH-1004

Cell membrane0.021

Rank 5 · LXL04_016740 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07724.21AAA_2274-478 aa

PF00004.36AAA278-384 aa

PF10431.16ClpB_D2-small485-554 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016740	`PF07724.21`	AAA_2	274	478	1.2e-31	110.7
LXL04_016740	`PF00004.36`	AAA	278	384	5.3e-15	56.7
LXL04_016740	`PF10431.16`	ClpB_D2-small	485	554	8.1e-11	42.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K7F6`	Arabidopsis thaliana	CLP protease regulatory subunit CLPX2, mitochondrial	58.234%	Swiss-Prot	strong database homology
`Q66GN9`	Arabidopsis thaliana	CLP protease regulatory subunit CLPX3, mitochondrial	58.609%	Swiss-Prot	strong database homology
`Q9FK07`	Arabidopsis thaliana	CLP protease regulatory subunit CLPX1, mitochondrial	71.395%	Swiss-Prot	moderate database homology

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