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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G097320
Reference: TK1151 Chr: Chr02 Coordinates: 25461282-25470896 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1234 bp · TkA02G097320|TK1151|cDNA

GGATGCTTTAGGTTATTTGTGTTTTAATTATTACCCTTTTAGGTCTTTACCCAAAAGATTTAGCTCAGGCTTTTTGGATGCTTTAGAATATATATATTTCTTTGGTTACCCTTTAGGACTTTACCCAAAACGTTTCAAGCACGAAATCTGGTTTCACTTGAGATGCCTTACAGCAAAGTTGAACAACTTTGGGATGGGGGTGAACATAAGGTTCTTGACAAGCTCCGATTCCTCGACCTCCGTGGTTCAAAGTTGAGGAC...

CDS

Download CDS FASTA

2646 bp · TkA02G097320|TK1151|CDS

ATGGCGGCTTCTTCTTCTTCATCCGTTCAGAAGAGCTTCAAATATGATGTATTTTTGAGTTTTAGAGGTACAGACACTCGTAAGAATTTTATCGATCATCTTTATCAGGCTCTTAAGGAGAAAGCTATATACACTTACAAGGACGACGAGAGAATCATGAAAGGGAAAAAGATCAGTGATGATCTCCTCGCATCCATTGAAGAGTCACAATTTTACATCGTGGTTTTCTCAAAAAACTATGCTTCTTCATCATGGTGCTT...

Protein

Download Protein FASTA

881 aa · TkA02G097320|TK1151|PROTEIN

MAASSSSSVQKSFKYDVFLSFRGTDTRKNFIDHLYQALKEKAIYTYKDDERIMKGKKISDDLLASIEESQFYIVVFSKNYASSSWCLEELVKIMECHKTKKHTAYPVFLDVEPTEVRHQTGAVGEAFSTHEHNEVAGQWRKALKDASDLAGWELKNTANGSEASFIKKIIEDISLQLYTINFSFDKKLVGIETRVNDIVSSLEIGSDDVRMIGIKGMGGAGKTTLARAVFDKISIQFEGKSFVENVREVTTTSLTGLKSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G097320
TK1151 IDTkA02G097320
OH-1004 IDLXL04_016943
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)74.800
Protein coverage (%)TK1151 80.477 / OH-1004 62.269
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G097320
LocationChr02:25461282-25470896 (+)
DescriptionSimilar to RPV1: Disease resistance protein RPV1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16860 TIR-NB-LRR receptor-like protein that confers resistance to the pathogen Hyaloperonospora arabidopsis isolates Emoy2 and Emwa1 (downy mildew disease).
Arabidopsis RPP4 is a member of the RPP5 multigene family of TIR-NB-LRR genes and confers downy mildew resistance through multiple signalling components.2002 · DOI: 10.1046/j.0960-7412.2001.01229.x
A gain-of-function mutation in the Arabidopsis disease resistance gene RPP4 confers sensitivity to low temperature.2010 · DOI: 10.1104/pp.110.157610

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016943 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0019677 NAD+ catabolic process Biological Process
GO:0043068 positive regulation of programmed cell death Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003953 NAD+ nucleosidase activity Molecular Function
GO:0042803 protein homodimerization activity Molecular Function
GO:0043531 ADP binding Molecular Function
GO:0050135 NADP+ nucleosidase activity Molecular Function
GO:0061809 NAD+ nucleosidase activity, cyclic ADP-ribose generating Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.456
Rank 1 · TkA02G097320 · TK1151
Cell membrane0.304
Rank 2 · TkA02G097320 · TK1151
Nucleus0.237
Rank 3 · TkA02G097320 · TK1151
Endoplasmic reticulum0.101
Rank 4 · TkA02G097320 · TK1151
Extracellular0.063
Rank 5 · TkA02G097320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931NB-ARC6-72 aa
PF01582TIR14-177 aa
PF26659PH_DUOX14-42 aa
PF13676TIR_217-113 aa
PF13401AAA_2224-108 aa
PF24883NPHP3_N28-75 aa
PF13173AAA_14137-168 aa
PF04513Baculo_PEP_C159-229 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G097320PF00931NB-ARC6726.9e-2175.3
TkA02G097320PF01582TIR141772.8e-48164.8
TkA02G097320PF26659PH_DUOX14420.1112.9
TkA02G097320PF13676TIR_2171135.1e-1453.5
TkA02G097320PF13401AAA_22241080.0002422.2
TkA02G097320PF24883NPHP3_N28750.08113.8
TkA02G097320PF13173AAA_141371680.09813.4
TkA02G097320PF04513Baculo_PEP_C1592290.1412.9
TkA02G097320PF00931NB-ARC1923636.9e-2175.3
TkA02G097320PF13191AAA_161922570.02116.0
TkA02G097320PF25199nSTAND_NTPase51952280.0116.4
TkA02G097320PF01637ATPase_21963070.09313.2
TkA02G097320PF24883NPHP3_N2082360.08113.8
TkA02G097320PF13173AAA_142103080.09813.4
TkA02G097320PF05729NACHT2113080.004817.5
TkA02G097320PF13401AAA_222123090.0002422.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JNA9Arabidopsis thalianasp|F4JNA9|RPP4_ARATH Disease resistance protein RPP436.900%Swiss-ProtMedium

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