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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G095670
Reference: TK1151 Chr: Chr02 Coordinates: 25025770-25028083 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2007 bp · TkA02G095670|TK1151|cDNA

CAAGAGTATCTCTACACAAAAGTCGATAGTTGGGGACTTAGGGGTATATAAGGAAGGGTTCTAGGGCGGGAAAATTTTCATTTCACAAAAGTCGAACAGAAATGAGAGGCCCCGCCGGACGCCGCCCTCCATCGGAGCGCAATGTCCCCGACCACCGGCTCACCACTCCAACACCTGTAGATCCATGGCAGTTTAATGCCGGCATTGGAGGATCCCGCCGAGATTCCGACGCTAGTTTCTGCAGTAGCCGTCCCTCTTCT...

CDS

Download CDS FASTA

1740 bp · TkA02G095670|TK1151|CDS

ATGAGAGGCCCCGCCGGACGCCGCCCTCCATCGGAGCGCAATGTCCCCGACCACCGGCTCACCACTCCAACACCTGTAGATCCATGGCAGTTTAATGCCGGCATTGGAGGATCCCGCCGAGATTCCGACGCTAGTTTCTGCAGTAGCCGTCCCTCTTCTTGCTACTCTGCTGGCGTCAACCACCACCGTTCGGCCTCCGCCGTCAACATTACCGACCGGTCCTACCAAAGCCACGCTATTTCCATAATCAATTCCTACCT...

Protein

Download Protein FASTA

579 aa · TkA02G095670|TK1151|PROTEIN

MRGPAGRRPPSERNVPDHRLTTPTPVDPWQFNAGIGGSRRDSDASFCSSRPSSCYSAGVNHHRSASAVNITDRSYQSHAISIINSYLSASSFPISFKLKPLPSQKDIIETLKFVLTRLECPPSNKMEDDLFVVLKYLNCPIKLNKSALKALTPLSFPNVIAVIHWLVQTAMYNEHRANSTQSLSISGDIMFTYNLNTYLHYIRGDDDAMDREDDNFMEKLQQERSSMEEKAKVRSEIAKDLEAKLEAMKSGPSLRESKDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G095670
TK1151 IDTkA02G095670
OH-1004 IDLXL04_016877
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G095670
LocationChr02:25025770-25028083 (+)
DescriptionSimilar to NDC80: Kinetochore protein NDC80 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54630 Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division.
MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana.2018 · DOI: 10.1111/tpj.13823

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016877 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0000132 establishment of mitotic spindle orientation Biological Process
GO:0000278 mitotic cell cycle Biological Process
GO:0007052 mitotic spindle organization Biological Process
GO:0007057 spindle assembly involved in female meiosis I Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process
GO:0008315 G2/MI transition of meiotic cell cycle Biological Process
GO:0008608 attachment of spindle microtubules to kinetochore Biological Process
GO:0051298 centrosome duplication Biological Process
GO:0051301 cell division Biological Process
GO:0051310 metaphase chromosome alignment Biological Process
KEGG gene cross-reference
ath:AT3G54630
gga:395134
hsa:10403
spo:2540097
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.604
Rank 1 · TkA02G095670 · TK1151
Cytoplasm0.362
Rank 2 · TkA02G095670 · TK1151
Cell membrane0.035
Rank 3 · TkA02G095670 · TK1151
Golgi apparatus0.031
Rank 4 · TkA02G095670 · TK1151
Lysosome / Vacuole0.029
Rank 5 · TkA02G095670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08332CaMKII_AD58-66 aa
PF03801Ndc80_HEC74-178 aa
PF21673CCDC93_N101-121 aa
PF21673CCDC93_N124-170 aa
PF08066PMC2NT213-254 aa
PF21673CCDC93_N214-243 aa
PF00261Tropomyosin217-383 aa
PF17383kleA_kleC233-271 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G095670PF08332CaMKII_AD58660.2512.2
TkA02G095670PF03801Ndc80_HEC741782.2e-1660.5
TkA02G095670PF21673CCDC93_N1011210.2412.3
TkA02G095670PF21673CCDC93_N1241700.2412.3
TkA02G095670PF08066PMC2NT2132544.58.6
TkA02G095670PF21673CCDC93_N2142430.2412.3
TkA02G095670PF00261Tropomyosin2173836.66.8
TkA02G095670PF17383kleA_kleC2332713.68.7
TkA02G095670PF08332CaMKII_AD2353180.2512.2
TkA02G095670PF21673CCDC93_N2823310.2412.3
TkA02G095670PF08066PMC2NT2853244.58.6
TkA02G095670PF17383kleA_kleC3053383.68.7
TkA02G095670PF21673CCDC93_N3954120.2412.3
TkA02G095670PF08066PMC2NT4084544.58.6
TkA02G095670PF00261Tropomyosin4475726.66.8
TkA02G095670PF17383kleA_kleC4484803.68.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M1G5Arabidopsis thalianasp|Q9M1G5|NDC80_ARATH Kinetochore protein NDC80 homolog39.000%Swiss-ProtMedium

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