LXL04_016877 | RubberDandelionOmics

Gene overview

LXL04_016877

Reference: OH-1004 Chr: Chr03 Coordinates: 135930375-135932425 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · LXL04_016877|LXL04_016877|OH1004|cDNA

ATGAGAGGCCCCGCCGGACGCCGCCCTCCATCGGAGCGCAATGTCCCCGACCACCGGCTCACCACTCCAACACCTGTAGATCCATGGCAGTTTAATGCCGGCATTGGAGGATCCCGCCGAGATTCCGACGCTAGTTTCTGCAGTAGTCGTCCCTCTTCTTGCTACTCTGCTGGCGTCAACCACCACCGTTCGGCCTCCGCCGTCAACATTTCCGACCGGTCCTACCAAAGCCACGCTATTTCCATAATCAATTCCTACCT...

CDS

Download CDS FASTA

1740 bp · LXL04_016877|LXL04_016877|OH1004|CDS

ATGAGAGGCCCCGCCGGACGCCGCCCTCCATCGGAGCGCAATGTCCCCGACCACCGGCTCACCACTCCAACACCTGTAGATCCATGGCAGTTTAATGCCGGCATTGGAGGATCCCGCCGAGATTCCGACGCTAGTTTCTGCAGTAGTCGTCCCTCTTCTTGCTACTCTGCTGGCGTCAACCACCACCGTTCGGCCTCCGCCGTCAACATTTCCGACCGGTCCTACCAAAGCCACGCTATTTCCATAATCAATTCCTACCT...

Protein

Download Protein FASTA

579 aa · LXL04_016877|LXL04_016877|OH1004|PROTEIN

MRGPAGRRPPSERNVPDHRLTTPTPVDPWQFNAGIGGSRRDSDASFCSSRPSSCYSAGVNHHRSASAVNISDRSYQSHAISIINSYLSASSFPISFKLKPLPSQKDIIETLKFVLTRLECPPSNKMEDDLFLVLKYLNCPIKLNKSALKALTPLSFPNVIAVIHWLVQTAMYNEHRANSTQSLSNSGDTMFTYNLNTYLHYIRGDDDAMDREDDNFMEKLQQERSSMEEKANVRSEIAKDLEAKLEAMKSGPSLRESKDE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016877`
TK1151 ID	TkA02G095670
OH-1004 ID	LXL04_016877
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016877

Location Chr03:135930375-135932425 (-)

Description Similar to NDC80: Kinetochore protein NDC80 homolog

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54630`	Acts as a component of the essential kinetochore-associated NDC80 complex, which is required for chromosome segregation and spindle checkpoint activity to ensure proper cell division.	MUN (MERISTEM UNSTRUCTURED), encoding a SPC24 homolog of NDC80 kinetochore complex, affects development through cell division in Arabidopsis thaliana.2018 · DOI: 10.1111/tpj.13823

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016877 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000070 mitotic sister chromatid segregation Biological Process

GO:0000132 establishment of mitotic spindle orientation Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0007052 mitotic spindle organization Biological Process

GO:0007057 spindle assembly involved in female meiosis I Biological Process

GO:0007059 chromosome segregation Biological Process

GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process

GO:0008315 G2/MI transition of meiotic cell cycle Biological Process

GO:0008608 attachment of spindle microtubules to kinetochore Biological Process

GO:0051298 centrosome duplication Biological Process

GO:0051301 cell division Biological Process

GO:0051310 metaphase chromosome alignment Biological Process

KEGG gene cross-reference

ath:AT3G54630

gga:395134

hsa:10403

spo:2540097

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.640

Rank 1 · LXL04_016877 · OH-1004

Cytoplasm0.340

Rank 2 · LXL04_016877 · OH-1004

Cell membrane0.033

Rank 3 · LXL04_016877 · OH-1004

Golgi apparatus0.028

Rank 4 · LXL04_016877 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_016877 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03801.20Ndc80_HEC74-178 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016877	`PF03801.20`	Ndc80_HEC	74	178	2.7e-16	60.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M1G5`	Arabidopsis thaliana	Kinetochore protein NDC80 homolog	42.301%	Swiss-Prot	moderate database homology

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