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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G091120
Reference: TK1151 Chr: Chr02 Coordinates: 23704000-23707527 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1902 bp · TkA02G091120|TK1151|cDNA

AAAAAGACCAAAATCGAGACGTATCAAAAACCTAAACACGATATCCTGGAAGTCCTGCTACTGTGTGCATCTGATATACCTTCAAACAATCTGTGCAGATACGGATTCGAGTTCGAGGAACGATCCACAGGCCAACGCAACCCTATTTTAGCCGTCGCTTCTCGTCGACACCACTCCAACTAAGATTCAGAAACCATGGCACATAGAATCTTAAGAGACGTAGAAGCTGATGGCTGGGAAAGATCCGACTTCCCAATCAT...

CDS

Download CDS FASTA

1452 bp · TkA02G091120|TK1151|CDS

ATGGCACATAGAATCTTAAGAGACGTAGAAGCTGATGGCTGGGAAAGATCCGACTTCCCAATCATATGTGAATCATGTCTAGGTGACAATCCCTACATTCGAATGACAAAAGCAAATTATGATAAGGAGTGCAAGATCTGCACAAGGCCTTTTACTGTATTCAGATGGAGACCTGGTAGGGATGCAAGATACAAGAAAAGTGAAATCTGTCAAACTTGCAGTAAACTAAAAAATGTCTGTCAAGTTTGTTTGTTGGATCT...

Protein

Download Protein FASTA

483 aa · TkA02G091120|TK1151|PROTEIN

MAHRILRDVEADGWERSDFPIICESCLGDNPYIRMTKANYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSITSHDSIPKSDVNREYFAEEHDRKARAGLDYESSYGKERPNDTILKLQRTTPYYKRNRAHICSFFIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLEPPVDETIRTLYIGGIDARIIEQDLRDNFYTHGEIESVKIV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G091120
TK1151 IDTkA02G091120
OH-1004 IDLXL04_038790
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)84.500
Protein coverage (%)TK1151 79.710 / OH-1004 78.926
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G091120
LocationChr02:23704000-23707527 (-)
DescriptionSimilar to Os06g0170500: Zinc finger CCCH domain-containing protein 40
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07360 Zinc finger CCCH domain-containing protein 4. No verified direct reference in this release
At2g29580 Zinc finger CCCH domain-containing protein 25. No verified direct reference in this release
At5g07060 Zinc finger CCCH domain-containing protein 53. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os06g0170500 Zinc finger CCCH domain-containing protein 40. No verified direct reference in this release
Os07g0281000 Zinc finger CCCH domain-containing protein 49. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042742 defense response to bacterium Biological Process
GO:0000974 Prp19 complex Cellular Component
GO:0005634 nucleus Cellular Component
GO:0071006 U2-type catalytic step 1 spliceosome Cellular Component
GO:0071007 U2-type catalytic step 2 spliceosome Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0017070 U6 snRNA binding Molecular Function
GO:0036002 pre-mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G07360
ath:AT2G29580
ath:AT5G07060
dosa:Os06g0170500
dosa:Os07g0281000
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.810
Rank 1 · TkA02G091120 · TK1151
Cytoplasm0.350
Rank 2 · TkA02G091120 · TK1151
Cell membrane0.027
Rank 3 · TkA02G091120 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA02G091120 · TK1151
Mitochondrion0.019
Rank 5 · TkA02G091120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21369STL11_N20-110 aa
PF25261zf-CCCH_PARP1242-48 aa
PF25261zf-CCCH_PARP1267-83 aa
PF16131Torus140-193 aa
PF25584zf-CCCH_RBM22157-183 aa
PF15663zf-CCCH_3158-184 aa
PF22628zf-CCCH_10158-181 aa
PF25261zf-CCCH_PARP12160-183 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G091120PF21369STL11_N201106.7e-31107.5
TkA02G091120PF25261zf-CCCH_PARP1242480.04214.8
TkA02G091120PF25261zf-CCCH_PARP1267830.04214.8
TkA02G091120PF16131Torus1401935.7e-0834.0
TkA02G091120PF25584zf-CCCH_RBM221571832.7e-1247.2
TkA02G091120PF15663zf-CCCH_31581840.01516.2
TkA02G091120PF22628zf-CCCH_101581810.04114.1
TkA02G091120PF25261zf-CCCH_PARP121601830.04214.8
TkA02G091120PF18044zf-CCCH_41611810.02215.2
TkA02G091120PF14608zf-CCCH_21621817.7e-0523.8
TkA02G091120PF18345zf_CCCH_41631819.4e-0626.2
TkA02G091120PF00642zf-CCCH1631810.006717.0
TkA02G091120PF25542zf-CCCH_121651820.003717.6
TkA02G091120PF16842RRM_occluded2282830.01415.9
TkA02G091120PF00076RRM_12302881.2e-0835.5
TkA02G091120PF25701RRM_YTH12432850.04314.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LNV5Arabidopsis thalianasp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 480.300%Swiss-ProtHigh
Q9ZW36Arabidopsis thalianasp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 2577.600%Swiss-ProtHigh
Q9FL40Arabidopsis thalianasp|Q9FL40|C3H53_ARATH Zinc finger CCCH domain-containing protein 5372.100%Swiss-ProtMedium
Q5SNN4Oryza sativa subsp. japonicasp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 4075.000%Swiss-ProtHigh
Q6Z358Oryza sativa subsp. japonicasp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 4974.200%Swiss-ProtHigh

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