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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G086050
Reference: TK1151 Chr: Chr02 Coordinates: 22362160-22365675 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1638 bp · TkA02G086050|TK1151|cDNA

CTAACCCCTTCAACTGCAAGAAACCCTAGTCATATATCTCTCTCATTGAGAACTCTCCACTGTGCTCTCGGAAGAAACGCTCGTGTAACAATCAGATCTGACGTAAAAACGAACGTTTGTTCCGTCAAGCAATGGCGCTGGTCATTCATGCTGCAAAAACCAACAAAAATGCTTTCAAGGCCCTGATTGCTGCAGAATACAGTGGTGTTGAAATCAAATGGGCTGAAAATTTCGAAATGGGAGTGACAAATAAAACTCCA...

CDS

Download CDS FASTA

1257 bp · TkA02G086050|TK1151|CDS

ATGGCGCTGGTCATTCATGCTGCAAAAACCAACAAAAATGCTTTCAAGGCCCTGATTGCTGCAGAATACAGTGGTGTTGAAATCAAATGGGCTGAAAATTTCGAAATGGGAGTGACAAATAAAACTCCAGAGTTTCTTAAAATGAACCCTATTGGAAAGGTTCCTGTTCTTGAAACCCCAAATGGCCCATTGTTTGAGAGCAATGCCATTGCTCGCTATGTTGCCCGCTTGAAATCTGACACTTCTCTTTTCGGATGTTC...

Protein

Download Protein FASTA

418 aa · TkA02G086050|TK1151|PROTEIN

MALVIHAAKTNKNAFKALIAAEYSGVEIKWAENFEMGVTNKTPEFLKMNPIGKVPVLETPNGPLFESNAIARYVARLKSDTSLFGCSPVEYGQIEQWIDFASLEIDANLLKWLLPRFGYATYVAPVEEAAIAGLKRGLEALNTYLSTHTFLIGHSVTLADIIMTCNLYLGFKLLMTKTFTSEFPHVERYFWTMVNQPNFSKVMGEVKQTEAVPPLPSGKKPEAKPKEVSKPKAEVKKEEKKVEAGNGDEEEAAPKPKAKN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G086050
TK1151 IDTkA02G086050
OH-1004 IDLXL04_016978
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G086050
LocationChr02:22362160-22365675 (+)
DescriptionSimilar to Elongation factor 1-gamma
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g09640 Probably plays a role in anchoring the complex to other cellular components. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0220500 Probably plays a role in anchoring the complex to other cellular components. No verified direct reference in this release
Os02g0220600 Probably plays a role in anchoring the complex to other cellular components. No verified direct reference in this release
Os06g0571400 Probably plays a role in anchoring the complex to other cellular components. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016978 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010043 response to zinc ion Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0010494 cytoplasmic stress granule Cellular Component
GO:0003746 translation elongation factor activity Molecular Function
GO:0004364 glutathione transferase activity Molecular Function
KEGG gene cross-reference
ath:AT1G09640
ath:AT1G57720
dosa:Os02g0220600
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.790
Rank 1 · TkA02G086050 · TK1151
Nucleus0.192
Rank 2 · TkA02G086050 · TK1151
Cell membrane0.097
Rank 3 · TkA02G086050 · TK1151
Endoplasmic reticulum0.089
Rank 4 · TkA02G086050 · TK1151
Mitochondrion0.065
Rank 5 · TkA02G086050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18485GST_N_58-74 aa
PF02798GST_N11-76 aa
PF13409GST_N_214-76 aa
PF13417GST_N_314-79 aa
PF00043GST_C120-197 aa
PF22041GST_C_7125-168 aa
PF13410GST_C_2128-190 aa
PF14497GST_C_3134-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G086050PF18485GST_N_58740.002519.0
TkA02G086050PF02798GST_N11765.8e-1452.9
TkA02G086050PF13409GST_N_214762.6e-0938.3
TkA02G086050PF13417GST_N_314797.3e-0833.3
TkA02G086050PF00043GST_C1201975.3e-1040.1
TkA02G086050PF22041GST_C_71251680.03314.8
TkA02G086050PF13410GST_C_21281907.1e-0523.6
TkA02G086050PF14497GST_C_31341990.0001722.4
TkA02G086050PF21972Arc1p_N_like1351940.0001322.9
TkA02G086050PF17171GST_C_61361630.212.1
TkA02G086050PF00647EF1G1601715.2e-43146.0
TkA02G086050PF00043GST_C2292425.3e-1040.1
TkA02G086050PF02798GST_N2352615.8e-1452.9
TkA02G086050PF00647EF1G2573645.2e-43146.0
TkA02G086050PF13410GST_C_23273377.1e-0523.6
TkA02G086050PF00647EF1G3764055.2e-43146.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04487Arabidopsis thalianasp|O04487|EF1G1_ARATH Probable elongation factor 1-gamma 174.200%Swiss-ProtHigh
Q6YW46Oryza sativa subsp. japonicasp|Q6YW46|EF1G2_ORYSJ Elongation factor 1-gamma 274.800%Swiss-ProtHigh
Q9ZRI7Oryza sativa subsp. japonicasp|Q9ZRI7|EF1G1_ORYSJ Elongation factor 1-gamma 172.800%Swiss-ProtHigh
Q5Z627Oryza sativa subsp. japonicasp|Q5Z627|EF1G3_ORYSJ Elongation factor 1-gamma 372.100%Swiss-ProtHigh

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