TkA02G078860 | RubberDandelionOmics

Gene overview

TkA02G078860

Reference: TK1151 Chr: Chr02 Coordinates: 20516829-20521254 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1674 bp · TkA02G078860|TK1151|cDNA

ATTGGTATGTTTAGGTTTATCACGTGTGCGCTGACTCATGTGATTGATTTATAAGATGAAACGTTATCCAATCCTCCCTAAATGTCCTCGACTTATCATCCGCATAACAGTCCCTCCATCTTTGGATTCTATATATACAACATGAAATGCAACAAGATTGGAGATTTAGACACCTTAATTTCTTGGAGGCTGAAAGGCAAATTGGTGATTTAATATTTAAACTGTACGAGACAAGTGTACCCTTATCTCTTCCAAGATGC...

CDS

Download CDS FASTA

993 bp · TkA02G078860|TK1151|CDS

ATGCAAACACCAACAAACGTAACCATAAAGGGCATTTTGGGTATTTTAATGGCAAGTCTCGATGAGAAAAACAAGAAGAAGGTAATCTCTTTAGGAATGGGAGACCCAACTACTTATTCTTGCTTCACTACCACCGATCTTGTTCAAGATTCCGTAATTCAAACTCTTGAATCCCGTAAATTCAATGGCTATTCACCAACAGTCGGCCTCCCACAAACACGAAATTGTGTTATTTATTTATGTTATTATACACACAGGGC...

Protein

Download Protein FASTA

330 aa · TkA02G078860|TK1151|PROTEIN

MQTPTNVTIKGILGILMASLDEKNKKKVISLGMGDPTTYSCFTTTDLVQDSVIQTLESRKFNGYSPTVGLPQTRNCVIYLCYYTHRAISEYLSKDLPYKLTADDVYITAGCTQAIEVAISILARPNANILVPKPGFPIYELCAAFRNVEIRHFNLIPENDWEVNLNEVDALVDHNTVAIVVINPGNPCGNVYSYQHLKKIAESAKKNRVVVIADEVYGHLAFGENPFIPMGVFGSIVPVITLGSLSKRWVVPGWRLGWFV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G078860`
TK1151 ID	TkA02G078860
OH-1004 ID	LXL04_001954
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.400
Protein coverage (%)	TK1151 99.394 / OH-1004 69.365 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G078860

Location Chr02:20516829-20521254 (-)

Description Similar to At5g53970: Probable aminotransferase TAT2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53970`	Probable aminotransferase TAT2.	No verified direct reference in this release
`At2g20610`	C-S lyase involved in glucosinolate biosynthesis.	Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis.2004 · DOI: 10.1111/j.1365-313x.2004.02002.x
`At5g36160`	Transaminase involved in tyrosine breakdown.	Identification and Partial Characterization of an L-Tyrosine Aminotransferase (TAT) from Arabidopsis thaliana.2010 · DOI: 10.1155/2010/549572

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0306401`	Involved in biosynthesis of mugineic acid family phytosiderophores, which are ferric iron chelators produced in graminaceous plants in response to iron deficiency.	Identification and localisation of the rice nicotianamine aminotransferase gene OsNAAT1 expression suggests the site of phytosiderophore synthesis in rice.2008 · DOI: 10.1007/s11103-007-9262-8

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001954 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006572 L-tyrosine catabolic process Biological Process

GO:0010189 vitamin E biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0004838 L-tyrosine-2-oxoglutarate transaminase activity Molecular Function

GO:0030170 pyridoxal phosphate binding Molecular Function

GO:0033855 nicotianamine aminotransferase activity Molecular Function

KEGG gene cross-reference

ag:BAA87052

ag:BAA87053

ath:AT5G53970

dosa:Os02g0306401

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.557

Rank 1 · TkA02G078860 · TK1151

Nucleus0.156

Rank 2 · TkA02G078860 · TK1151

Peroxisome0.123

Rank 3 · TkA02G078860 · TK1151

Mitochondrion0.076

Rank 4 · TkA02G078860 · TK1151

Endoplasmic reticulum0.071

Rank 5 · TkA02G078860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00155Aminotran_1_226-328 aa

PF30372RcsA_N77-95 aa

PF01053Cys_Met_Meta_PP102-217 aa

PF00266Aminotran_5103-216 aa

PF01212Beta_elim_lyase111-214 aa

PF30372RcsA_N164-212 aa

PF00202Aminotran_3165-216 aa

PF22973GWD1_pHisD180-219 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G078860	`PF00155`	Aminotran_1_2	26	328	3.1e-42	145.8
TkA02G078860	`PF30372`	RcsA_N	77	95	0.016	15.6
TkA02G078860	`PF01053`	Cys_Met_Meta_PP	102	217	0.0023	17.3
TkA02G078860	`PF00266`	Aminotran_5	103	216	0.00062	19.6
TkA02G078860	`PF01212`	Beta_elim_lyase	111	214	0.0006	19.9
TkA02G078860	`PF30372`	RcsA_N	164	212	0.016	15.6
TkA02G078860	`PF00202`	Aminotran_3	165	216	0.065	12.6
TkA02G078860	`PF22973`	GWD1_pHisD	180	219	0.074	13.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FN30`	Arabidopsis thaliana	sp\|Q9FN30\|TAT2_ARATH Probable aminotransferase TAT2	71.400%	Swiss-Prot	High
`Q9SIV0`	Arabidopsis thaliana	sp\|Q9SIV0\|SUR1_ARATH S-alkyl-thiohydroximate lyase SUR1	48.600%	Swiss-Prot	Medium
`Q9LVY1`	Arabidopsis thaliana	sp\|Q9LVY1\|TAT_ARATH Tyrosine aminotransferase	49.300%	Swiss-Prot	Medium
`A0A0P0VI36`	Oryza sativa subsp. japonica	sp\|A0A0P0VI36\|NAAT1_ORYSJ Nicotianamine aminotransferase 1	51.800%	Swiss-Prot	High

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