TkA02G060350 | RubberDandelionOmics

Gene overview

TkA02G060350

Reference: TK1151 Chr: Chr02 Coordinates: 15712389-15715056 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1709 bp · TkA02G060350|TK1151|cDNA

AAACAAGTTGTATAACCTGGTTAGCTATTAAAAGACAATCAAAATGATATATAAAAATAGTTTTTTTCCAGACTTCTTACAATTATAGACTTATAGTCGATAAAAAAAAGCTTAATTTTGCCCGGAACATAGCAATTTCCAAAGGGCAAAGGCCGGCCGATCAGTTAACAATTGATACAGAAGCAGTCAGAGCTCAAAAGATACGGGCGGCGGTCAGGGCGGGGAACACCGCCGTAAACCACCACAAATGGCTTCAAACC...

CDS

Download CDS FASTA

1263 bp · TkA02G060350|TK1151|CDS

ATGGCTTCAAACCACCATCTCAAAAGACCTAATCAACTATCTTCTTCCTCTACAATCTACTTCTACATCTTCGTTTCCATCATCGCCCTCGCCGCTCTTTTTCTCCTCTCCTCTCACTACCTCACCTCTTACTCCACGGCTCCGATGCGTGTTGTATCACTCAAACCGATCAAGCAATACGACGACAGTGGAGCTGCATCAGCAACATGCGATTACTCAGAGGGCAAGTGGTTCTACGATCCGACAGTCAGACCTCCTCG...

Protein

Download Protein FASTA

420 aa · TkA02G060350|TK1151|PROTEIN

MASNHHLKRPNQLSSSSTIYFYIFVSIIALAALFLLSSHYLTSYSTAPMRVVSLKPIKQYDDSGAASATCDYSEGKWFYDPTVRPPRYDETCNEIYKGWNCVAGNRSGAAEIVKWRWQPNHCALPQFDPLRFLESHRDISIGFVGDSLNRNMFVSLFCSLRHVTTEVKKWRPAGADRAFTFLNYNLTIAYHRTNLLARYGRWSANPKGGELESLGYKEGYRVDVDIPEATWADAPSFHNILIFNTGHWWWAPSKFDPVKS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G060350`
TK1151 ID	TkA02G060350
OH-1004 ID	LXL04_017283
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G060350

Location Chr02:15712389-15715056 (-)

Description Similar to TBL13: Protein trichome birefringence-like 13

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g14530`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g64470`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g02440`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At3g62390`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g19160`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017283 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008374 O-acyltransferase activity Molecular Function

GO:0016413 O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G60790

ath:AT2G14530

ath:AT3G02440

ath:AT3G62390

ath:AT5G64470

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.517

Rank 1 · TkA02G060350 · TK1151

Cell membrane0.084

Rank 2 · TkA02G060350 · TK1151

Extracellular0.070

Rank 3 · TkA02G060350 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA02G060350 · TK1151

Nucleus0.032

Rank 5 · TkA02G060350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20487DUF672628-53 aa

PF14416PMR5N69-122 aa

PF13839PC-Esterase73-115 aa

PF13839PC-Esterase124-411 aa

PF18450zf_C2H2_6154-169 aa

PF14416PMR5N247-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G060350	`PF20487`	DUF6726	28	53	0.38	11.5
TkA02G060350	`PF14416`	PMR5N	69	122	1.1e-12	48.8
TkA02G060350	`PF13839`	PC-Esterase	73	115	4e-69	234.4
TkA02G060350	`PF13839`	PC-Esterase	124	411	4e-69	234.4
TkA02G060350	`PF18450`	zf_C2H2_6	154	169	0.18	12.4
TkA02G060350	`PF14416`	PMR5N	247	253	1.1e-12	48.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9ZQR5`	Arabidopsis thaliana	sp\|Q9ZQR5\|TBL13_ARATH Protein trichome birefringence-like 13	65.400%	Swiss-Prot	High
`Q9FGE9`	Arabidopsis thaliana	sp\|Q9FGE9\|TBL12_ARATH Protein trichome birefringence-like 12	43.400%	Swiss-Prot	Medium
`Q9M896`	Arabidopsis thaliana	sp\|Q9M896\|TBL20_ARATH Protein trichome birefringence-like 20	32.700%	Swiss-Prot	Medium
`Q9LZQ1`	Arabidopsis thaliana	sp\|Q9LZQ1\|TBL6_ARATH Protein trichome birefringence-like 6	29.500%	Swiss-Prot	Low
`Q5BPJ0`	Arabidopsis thaliana	sp\|Q5BPJ0\|TBL11_ARATH Protein trichome birefringence-like 11	32.300%	Swiss-Prot	Medium

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