TkA02G037070 | RubberDandelionOmics

Gene overview

TkA02G037070

Reference: TK1151 Chr: Chr02 Coordinates: 9287361-9293720 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2856 bp · TkA02G037070|TK1151|cDNA

TATCAATCTGAAGAACGTGGCTACTGTGAAAACATAGAGGCGGTATTACAGAGACTCTGGGTTCTTCTTGTTTCTCTGCTGACGAGATACTGATCGATCTCGACGCAATCGAAAGTTGAGAGATGGCGGAGCACGGTGGCGGAGGCGGATGTTGCCCGCCGATGGATCTGTTCCGTTCAGAACCGATGCATCTAATACAAGTCATTATCCCAATCGAGTCCGCTCGCTTGACCGTCTCGTACCTTGGAGATATCGGCCTC...

CDS

Download CDS FASTA

2325 bp · TkA02G037070|TK1151|CDS

ATGGCGGAGCACGGTGGCGGAGGCGGATGTTGCCCGCCGATGGATCTGTTCCGTTCAGAACCGATGCATCTAATACAAGTCATTATCCCAATCGAGTCCGCTCGCTTGACCGTCTCGTACCTTGGAGATATCGGCCTCATTCAATTCAAAGATCTGAACGTAGAAAAAAGCCCTTTTCAGAGAACATATGCAGGCCAGATTAAAAGATGCGCTGAGCTGGCACGAAAGTTGCGTTTCTTCAAAGATCAAATGTCAAAGGC...

Protein

Download Protein FASTA

774 aa · TkA02G037070|TK1151|PROTEIN

MAEHGGGGGCCPPMDLFRSEPMHLIQVIIPIESARLTVSYLGDIGLIQFKDLNVEKSPFQRTYAGQIKRCAELARKLRFFKDQMSKADIIPSGKPNTKAVLNLDDIEVNLGDLEAELTEMNANSEKLQRGYNELVEYKLVLQKAGEIFNVAQSSATAQHGESSSHHGEESLESPLLKDQVDQGKQVKLGFLTGLVPKEKAMAFERILFRATRGNVFLRQASVEEAVTDPNSGQKVQKSVFVVFFSGERAKNKILKICEAF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G037070`
TK1151 ID	TkA02G037070
OH-1004 ID	LXL04_017523
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 99.612 / OH-1004 94.254 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G037070

Location Chr02:9287361-9293720 (+)

Description Similar to VHA-a3: V-type proton ATPase subunit a3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g21410`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation.2010 · DOI: 10.1073/pnas.0913035107
`At4g39080`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Arabidopsis V-ATPase activity at the tonoplast is required for efficient nutrient storage but not for sodium accumulation.2010 · DOI: 10.1073/pnas.0913035107
`At2g28520`	Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes.	Reduced V-ATPase activity in the trans-Golgi network causes oxylipin-dependent hypocotyl growth Inhibition in Arabidopsis.2008 · DOI: 10.1105/tpc.108.058362

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017523 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006911 phagocytosis, engulfment Biological Process

GO:0007035 vacuolar acidification Biological Process

GO:0015986 proton motive force-driven ATP synthesis Biological Process

GO:0016241 regulation of macroautophagy Biological Process

GO:0051453 regulation of intracellular pH Biological Process

GO:0070070 proton-transporting V-type ATPase complex assembly Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:2000012 regulation of auxin polar transport Biological Process

GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT2G21410

ath:AT2G28520

ath:AT4G39080

ddi:DDB_G0291858

mmu:11975

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.378

Rank 1 · TkA02G037070 · TK1151

Golgi apparatus0.292

Rank 2 · TkA02G037070 · TK1151

Cytoplasm0.219

Rank 3 · TkA02G037070 · TK1151

Cell membrane0.173

Rank 4 · TkA02G037070 · TK1151

Lysosome / Vacuole0.164

Rank 5 · TkA02G037070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01496V_ATPase_I40-771 aa

PF25443ANG-149-80 aa

PF24079UBR499-166 aa

PF14932HAUS-augmin3100-172 aa

PF25443ANG-1110-137 aa

PF23246CC_CDK5RAP2135-182 aa

PF027395_3_exonuc_N237-282 aa

PF25443ANG-1270-328 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G037070	`PF01496`	V_ATPase_I	40	771	9e-277	921.0
TkA02G037070	`PF25443`	ANG-1	49	80	0.94	10.4
TkA02G037070	`PF24079`	UBR4	99	166	0.81	10.8
TkA02G037070	`PF14932`	HAUS-augmin3	100	172	0.67	10.1
TkA02G037070	`PF25443`	ANG-1	110	137	0.94	10.4
TkA02G037070	`PF23246`	CC_CDK5RAP2	135	182	0.32	11.9
TkA02G037070	`PF02739`	5_3_exonuc_N	237	282	0.21	12.0
TkA02G037070	`PF25443`	ANG-1	270	328	0.94	10.4
TkA02G037070	`PF14932`	HAUS-augmin3	289	331	0.67	10.1
TkA02G037070	`PF23246`	CC_CDK5RAP2	297	328	0.32	11.9
TkA02G037070	`PF24079`	UBR4	303	312	0.81	10.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SJT7`	Arabidopsis thaliana	sp\|Q9SJT7\|VHAA2_ARATH V-type proton ATPase subunit a2	74.100%	Swiss-Prot	High
`Q8W4S4`	Arabidopsis thaliana	sp\|Q8W4S4\|VHAA3_ARATH V-type proton ATPase subunit a3	73.900%	Swiss-Prot	High
`Q8RWZ7`	Arabidopsis thaliana	sp\|Q8RWZ7\|VHAA1_ARATH V-type proton ATPase subunit a1	61.000%	Swiss-Prot	High

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