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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G635250
Reference: TK1151 Chr: Chr01 Coordinates: 160683483-160688605 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4452 bp · TkA01G635250|TK1151|cDNA

AGGGTATCTGTCTTTGTGTGGAAGGCTGAAGGCAATCAATAAAAAAAAACGTGAATTAAAGGCAAATCGCTTGCAATTTGCAGGCAGATAGAACATAGAAGGGACTAGACGACTCATCACTTAAAGCACGGAGGAGTAAAGAACCAACATTTATGCTCATCCACTCGTTTCTTTCTCTCCCTCATTACTCACGCATCAGTTTCTCTTTCTCCTCGATCTCCGTGCCCCGCCTGCCTTCGTTCTTTCATCCGTTTCTTTGT...

CDS

Download CDS FASTA

3042 bp · TkA01G635250|TK1151|CDS

ATGCAGTTGGATAATGATAATTCCAATTCCAGGCTAATATACATCAACAACCCTCAAAGAACCAATGAAGAATACGTTTTCACTGGAAACAAAATCACAACCAGCAAATACACAATCATAAACTTCCTACCCAAAAATCTCTTCATTCAGTTTCACAGAGTGGCTTACGTATACTTTTTAGCAATCGCAGCCCTCAATCAGCTCCCGCCTTTAGCAGTATTCGGGGAGAACAGTCTCTCTCTTCCCTCTACTTTTTGTCC...

Protein

Download Protein FASTA

1013 aa · TkA01G635250|TK1151|PROTEIN

MQLDNDNSNSRLIYINNPQRTNEEYVFTGNKITTSKYTIINFLPKNLFIQFHRVAYVYFLAIAALNQLPPLAVFGENSLSLPSTFCPHCNRHQRRIRRLEKTQIRQKRKQQGIPRSRIRKLPGEKMKDIRVGEVVKIRADETIPCDMVLMWTSDPSGIAYIQTMNLDGESNLKTRYARQETSVMPLASTTSGVIRCEHPNRNIYEFTANMELNGHKVSLSQSNIILRGCQVKNTEWVIGVVVYAGQETKAMLNSAISPSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G635250
TK1151 IDTkA01G635250
OH-1004 IDLXL04_015772
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)58.800
Protein coverage (%)TK1151 98.124 / OH-1004 83.152
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G635250
LocationChr01:160683483-160688605 (-)
DescriptionSimilar to ALA1: Phospholipid-transporting ATPase 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g04930 Involved in transport of phospholipids. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015772 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006892 post-Golgi vesicle-mediated transport Biological Process
GO:0007030 Golgi organization Biological Process
GO:0030335 positive regulation of cell migration Biological Process
GO:0032456 endocytic recycling Biological Process
GO:0034220 monoatomic ion transmembrane transport Biological Process
GO:0045332 phospholipid translocation Biological Process
GO:0061092 positive regulation of phospholipid translocation Biological Process
GO:0140331 aminophospholipid translocation Biological Process
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005802 trans-Golgi network Cellular Component
KEGG gene cross-reference
ath:AT5G04930
hsa:10396
hsa:79895
mmu:11980
spo:2541239
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.395
Rank 1 · TkA01G635250 · TK1151
Golgi apparatus0.256
Rank 2 · TkA01G635250 · TK1151
Cell membrane0.247
Rank 3 · TkA01G635250 · TK1151
Cytoplasm0.233
Rank 4 · TkA01G635250 · TK1151
Lysosome / Vacuole0.143
Rank 5 · TkA01G635250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209PhoLip_ATPase_N13-75 aa
PF03716WCCH85-93 aa
PF00122E1-E2_ATPase126-247 aa
PF16212PhoLip_ATPase_C256-286 aa
PF253236TM_PilS278-285 aa
PF08282Hydrolase_3377-435 aa
PF00702Hydrolase394-414 aa
PF13246Cation_ATPase474-666 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G635250PF16209PhoLip_ATPase_N13754.5e-2175.1
TkA01G635250PF03716WCCH85932.68.5
TkA01G635250PF00122E1-E2_ATPase1262470.002118.6
TkA01G635250PF16212PhoLip_ATPase_C2562867.3e-60203.5
TkA01G635250PF253236TM_PilS2782850.02914.8
TkA01G635250PF08282Hydrolase_33774350.001918.7
TkA01G635250PF00702Hydrolase3944143e-1041.5
TkA01G635250PF13246Cation_ATPase4746667.7e-1555.9
TkA01G635250PF26096DUF80335856020.0414.3
TkA01G635250PF00702Hydrolase6247033e-1041.5
TkA01G635250PF12710HAD6446870.2112.7
TkA01G635250PF08282Hydrolase_36657140.001918.7
TkA01G635250PF08282Hydrolase_37918150.001918.7
TkA01G635250PF12710HAD7938080.2112.7
TkA01G635250PF16212PhoLip_ATPase_C82610037.3e-60203.5
TkA01G635250PF253236TM_PilS8489160.02914.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P98204Arabidopsis thalianasp|P98204|ALA1_ARATH Phospholipid-transporting ATPase 157.400%Swiss-ProtHigh

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