LXL04_015772 | RubberDandelionOmics

Gene overview

LXL04_015772

Reference: OH-1004 Chr: Chr03 Coordinates: 83877542-83882024 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3582 bp · LXL04_015772|LXL04_015772|OH1004|cDNA

ATGCATCATTCATCTTTGCGCAAGAGGGTCGTCGCTGTCTTCGACCGGTTTAAGCTTTCATGGATCTTTACCTTGTTACTTTTGCTCAAGAACACGCCTGCAATCTTCTATCCCTTGTGGTTGCTGATTGTCACTGATAACTCCCAACACCAATCACCGAATACCTTGCAAGATTCCTCTTCCGAAGGAGAGATTCGGTCCAAAACTTGGAGCGCCAACTCAGTCTTCGTCAATCTGGGATCAAAGAGACTGTCGCATGG...

CDS

Download CDS FASTA

3582 bp · LXL04_015772|LXL04_015772|OH1004|CDS

ATGCATCATTCATCTTTGCGCAAGAGGGTCGTCGCTGTCTTCGACCGGTTTAAGCTTTCATGGATCTTTACCTTGTTACTTTTGCTCAAGAACACGCCTGCAATCTTCTATCCCTTGTGGTTGCTGATTGTCACTGATAACTCCCAACACCAATCACCGAATACCTTGCAAGATTCCTCTTCCGAAGGAGAGATTCGGTCCAAAACTTGGAGCGCCAACTCAGTCTTCGTCAATCTGGGATCAAAGAGACTGTCGCATGG...

Protein

Download Protein FASTA

1193 aa · LXL04_015772|LXL04_015772|OH1004|PROTEIN

MHHSSLRKRVVAVFDRFKLSWIFTLLLLLKNTPAIFYPLWLLIVTDNSQHQSPNTLQDSSSEGEIRSKTWSANSVFVNLGSKRLSHGSRGGATDSEAFSMSHREINVEDARLVYVNDALKTNERFEFAGNSIRTAKYSVLSFLPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGASILPLSVVLLVTAVKDAYEDWRRHKSDRIENNRMSSVLVNDRFKQKKCKDIQVGEIIKFSADDTIPSDIVLLSTSDPTGVAY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015772`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_015772

Location Chr03:83877542-83882024 (+)

Description Similar to ALA1: Phospholipid-transporting ATPase 1

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g04930`	Involved in transport of phospholipids.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015772 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006892 post-Golgi vesicle-mediated transport Biological Process

GO:0007030 Golgi organization Biological Process

GO:0030335 positive regulation of cell migration Biological Process

GO:0032456 endocytic recycling Biological Process

GO:0034220 monoatomic ion transmembrane transport Biological Process

GO:0045332 phospholipid translocation Biological Process

GO:0061092 positive regulation of phospholipid translocation Biological Process

GO:0140331 aminophospholipid translocation Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005802 trans-Golgi network Cellular Component

KEGG gene cross-reference

ath:AT5G04930

hsa:10396

hsa:79895

mmu:11980

spo:2541239

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.306

Rank 1 · LXL04_015772 · OH-1004

Endoplasmic reticulum0.289

Rank 2 · LXL04_015772 · OH-1004

Lysosome / Vacuole0.224

Rank 3 · LXL04_015772 · OH-1004

Golgi apparatus0.198

Rank 4 · LXL04_015772 · OH-1004

Cytoplasm0.151

Rank 5 · LXL04_015772 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16209.11PhoLip_ATPase_N113-179 aa

PF13246.13Cation_ATPase597-763 aa

PF16212.12PhoLip_ATPase_C924-1163 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015772	`PF16209.11`	PhoLip_ATPase_N	113	179	1.4e-24	86.3
LXL04_015772	`PF13246.13`	Cation_ATPase	597	763	4.3e-11	43.7
LXL04_015772	`PF16212.12`	PhoLip_ATPase_C	924	1163	4.4e-73	246.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P98204`	Arabidopsis thaliana	Phospholipid-transporting ATPase 1	68.930%	Swiss-Prot	strong database homology

JBrowse

View in Genome Browser

Gene Card