TkA01G630350 | RubberDandelionOmics

Gene overview

TkA01G630350

Reference: TK1151 Chr: Chr01 Coordinates: 159397057-159400299 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3169 bp · TkA01G630350|TK1151|cDNA

TTTGGGTCTTTGACTGGTCTTTATCGATTACCAAGAAAGAAAAAAATAAATAAATGATCAAGGAATGGATGTGGATGTGGGTTTGATTATATGGCCTCTTTACGTCTTTACGATGTGAACATGAAAGTCTTGGGACCATCTTTTTTGCGATTTTCTCGTGATTGTTTCCATATGGAGTCTAAATAAGTCGTGTTGAAGGTTTTCCTTTCCTGCTCTTTCTTTGCCAAAAGATTGATCGTTTTGAGCAGATTCAGTTCTCA...

CDS

Download CDS FASTA

2178 bp · TkA01G630350|TK1151|CDS

ATGGATCCAAGAGCTGGGAGATTTGGTAAGTTTGCTAATGGAAATGGAATTCAATTCGGGAATCAAGGTTTTACCGTATTACCAGATGAAAATGCCCTAGAAAATCGCTCCCGGTTTGACAATACGTTTTCGATCTATGCTCCGGTCAATGACATGGTTGCCCACCAGGATTCTCGCAATTTTAGAGGTCTACAATTTGATCCTCCAACCAATTCCTCGTCGCCGGTTGTCACTTCGAGTCTGGATGACGAGCTTAATGA...

Protein

Download Protein FASTA

725 aa · TkA01G630350|TK1151|PROTEIN

MDPRAGRFGKFANGNGIQFGNQGFTVLPDENALENRSRFDNTFSIYAPVNDMVAHQDSRNFRGLQFDPPTNSSSPVVTSSLDDELNEDCDLSDAILGYISQVLMEEDMEDKSCTLYESLDLQAAEKSFYDVLGKKYPPSPSYDEGLFSVDQYLQSPNGSIDYLHGDSNLQNLGERHVPCMSVSSSNSGNNIIDVDSPLSTFRSSEIRDGNQMTMMMNFNKGVEEANKFLPINTRLLTDFTAGNAFFPKFQDTESDERRTF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G630350`
TK1151 ID	TkA01G630350
OH-1004 ID	LXL04_000164
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.100
Protein coverage (%)	TK1151 93.517 / OH-1004 69.184 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G630350

Location Chr01:159397057-159400299 (+)

Description Similar to SCL9: Scarecrow-like protein 9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37650`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At1g07530`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g29060`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At2g29065`	Probable transcription factor involved in plant development.	No verified direct reference in this release
`At1g07520`	Probable transcription factor involved in plant development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000164 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0022900 electron transport chain Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0080183 response to photooxidative stress Biological Process

GO:0005634 nucleus Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009536 plastid Cellular Component

KEGG gene cross-reference

ath:AT1G07530

ath:AT2G29060

ath:AT2G29065

ath:AT2G37650

ath:AT5G17770

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.876

Rank 1 · TkA01G630350 · TK1151

Cytoplasm0.186

Rank 2 · TkA01G630350 · TK1151

Cell membrane0.028

Rank 3 · TkA01G630350 · TK1151

Plastid0.022

Rank 4 · TkA01G630350 · TK1151

Endoplasmic reticulum0.021

Rank 5 · TkA01G630350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15433MRP-S31319-383 aa

PF03514GRAS352-723 aa

PF06369Anemone_cytotox519-561 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G630350	`PF15433`	MRP-S31	319	383	0.099	13.0
TkA01G630350	`PF03514`	GRAS	352	723	3.5e-119	398.8
TkA01G630350	`PF06369`	Anemone_cytotox	519	561	0.06	13.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80933`	Arabidopsis thaliana	sp\|O80933\|SCL9_ARATH Scarecrow-like protein 9	50.800%	Swiss-Prot	High
`Q9XE58`	Arabidopsis thaliana	sp\|Q9XE58\|SCL14_ARATH Scarecrow-like protein 14	45.500%	Swiss-Prot	Medium
`P0C883`	Arabidopsis thaliana	sp\|P0C883\|SCL33_ARATH Scarecrow-like protein 33	46.100%	Swiss-Prot	Medium
`P0C884`	Arabidopsis thaliana	sp\|P0C884\|SCL34_ARATH Scarecrow-like protein 34	42.300%	Swiss-Prot	Medium
`Q3EDH0`	Arabidopsis thaliana	sp\|Q3EDH0\|SCL31_ARATH Scarecrow-like protein 31	39.400%	Swiss-Prot	Medium

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