RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G628460
Reference: TK1151 Chr: Chr01 Coordinates: 158913639-158917989 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2645 bp · TkA01G628460|TK1151|cDNA

CATTGGAACACGATGGAATCCATGGAAGCAACGAGGACGATAACGGAAATGCTTCTCACTTATTTCCCTTTCGTTTAAACAAACCAAGATTTCGAGTTTTCTAGGTTTCAATTCATGTCCAGACCATCCAGACAATGATCATCACACGCATATCACGATATCTCTCCCGTTCCTCTCACTCTACGTTCCAACGAAATGTGAGGGGAGTGATTTCAAGGGAATCATCAACAAATGCGAGCATCGCACGCTTAGAGGGCGGA...

CDS

Download CDS FASTA

2292 bp · TkA01G628460|TK1151|CDS

ATGATCATCACACGCATATCACGATATCTCTCCCGTTCCTCTCACTCTACGTTCCAACGAAATGTGAGGGGAGTGATTTCAAGGGAATCATCAACAAATGCGAGCATCGCACGCTTAGAGGGCGGAGCAGGGCTCGTGAGGACCTACTTAACCTCAGTTTGTGCTAAGGGGCCGATTATTAACCCTAAAAATCTAGCAAAAAACCTAGGGCTACGAAGGCTGTTCTGCAGCGAGGCACCAAAGAGAAAACACTATGAAAA...

Protein

Download Protein FASTA

763 aa · TkA01G628460|TK1151|PROTEIN

MIITRISRYLSRSSHSTFQRNVRGVISRESSTNASIARLEGGAGLVRTYLTSVCAKGPIINPKNLAKNLGLRRLFCSEAPKRKHYENYYPKGKREVPKGEGQKSGSKGDSGKNDNRENLMKQYQTLISPLMFFAFVLSSIFLTPQEQKQISFQEFKNKLLEPGLVDHIVVTNKSVAKVYVKPSLPHRIQVNEEPVQGGNVGSRGEVSHYEYYFNIGSVETFEEKLEEAQEALGIDPHNYVPVTYSSETNWGQELIRLTPT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G628460
TK1151 IDTkA01G628460
OH-1004 IDLXL04_000189
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G628460
LocationChr01:158913639-158917989 (+)
DescriptionSimilar to FTSH8: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g07510 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
At2g29080 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os05g0458400 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os01g0842600 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000189 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0016485 protein processing Biological Process
GO:0016540 protein autoprocessing Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0033619 membrane protein proteolysis Biological Process
GO:0034982 mitochondrial protein processing Biological Process
GO:0036444 calcium import into the mitochondrion Biological Process
GO:0051560 mitochondrial calcium ion homeostasis Biological Process
GO:0051604 protein maturation Biological Process
GO:0072753 cellular response to glutathione Biological Process
GO:0110097 regulation of calcium import into the mitochondrion Biological Process
GO:0141164 mitochondrial protein quality control Biological Process
KEGG gene cross-reference
ath:AT1G07510
ath:AT2G29080
dosa:Os01g0842600
dosa:Os05g0458400
hsa:10939
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.932
Rank 1 · TkA01G628460 · TK1151
Cytoplasm0.066
Rank 2 · TkA01G628460 · TK1151
Nucleus0.056
Rank 3 · TkA01G628460 · TK1151
Plastid0.031
Rank 4 · TkA01G628460 · TK1151
Cell membrane0.028
Rank 5 · TkA01G628460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06480FtsH_ext131-238 aa
PF00005ABC_tran166-242 aa
PF08298AAA_PrkA294-381 aa
PF13191AAA_16343-364 aa
PF06068TIP49344-380 aa
PF05496RuvB_N346-414 aa
PF01078Mg_chelatase346-362 aa
PF00004AAA347-479 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G628460PF06480FtsH_ext1312383.6e-1040.7
TkA01G628460PF00005ABC_tran1662420.213.0
TkA01G628460PF08298AAA_PrkA2943810.1611.7
TkA01G628460PF13191AAA_163433640.03815.2
TkA01G628460PF06068TIP493443800.002717.6
TkA01G628460PF05496RuvB_N3464140.006217.0
TkA01G628460PF01078Mg_chelatase3463620.09312.8
TkA01G628460PF00004AAA3474799.6e-43146.5
TkA01G628460PF07728AAA_53474150.000421.1
TkA01G628460PF13401AAA_223473750.0007620.5
TkA01G628460PF07724AAA_23474160.01116.5
TkA01G628460PF13173AAA_143474140.04514.5
TkA01G628460PF13671AAA_333473850.1413.2
TkA01G628460PF00005ABC_tran3473680.213.0
TkA01G628460PF13207AAA_173493870.1413.1
TkA01G628460PF13191AAA_163904140.03815.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZI8Arabidopsis thalianasp|Q8VZI8|FTSHA_ARATH ATP-dependent zinc metalloprotease FTSH 10, mitochondrial70.100%Swiss-ProtHigh
Q84WU8Arabidopsis thalianasp|Q84WU8|FTSH3_ARATH ATP-dependent zinc metalloprotease FTSH 3, mitochondrial72.400%Swiss-ProtHigh
Q0DHL4Oryza sativa subsp. japonicasp|Q0DHL4|FTSH8_ORYSJ ATP-dependent zinc metalloprotease FTSH 8, mitochondrial76.100%Swiss-ProtHigh
Q8S2A7Oryza sativa subsp. japonicasp|Q8S2A7|FTSH3_ORYSJ ATP-dependent zinc metalloprotease FTSH 3, mitochondrial69.800%Swiss-ProtHigh

JBrowse

View in Genome Browser