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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G621610
Reference: TK1151 Chr: Chr01 Coordinates: 156869677-156870582 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

711 bp · TkA01G621610|TK1151|cDNA

ATGGAGCGTATATGTGGTCGGGCATTGGGCTTACAATTTGACAAAAATACGGGATCATTATTCATTGCAGATGCTTATTTTGGGCTACTTTCAGTGGGCCCTAAAGGTGGGTTAGCCACTTCTCTGGTATCAAAAGACCAGAATCTTCCATTAAAATTCACAAATTCACTAGACATTGACCAGACCAATAGAGTCATCTACTTTACCGATAGCAGTCAACGTTACACCCGTAGGGATCACATGCTTGTCATACTCACAAA...

CDS

Download CDS FASTA

711 bp · TkA01G621610|TK1151|CDS

ATGGAGCGTATATGTGGTCGGGCATTGGGCTTACAATTTGACAAAAATACGGGATCATTATTCATTGCAGATGCTTATTTTGGGCTACTTTCAGTGGGCCCTAAAGGTGGGTTAGCCACTTCTCTGGTATCAAAAGACCAGAATCTTCCATTAAAATTCACAAATTCACTAGACATTGACCAGACCAATAGAGTCATCTACTTTACCGATAGCAGTCAACGTTACACCCGTAGGGATCACATGCTTGTCATACTCACAAA...

Protein

Download Protein FASTA

236 aa · TkA01G621610|TK1151|PROTEIN

MERICGRALGLQFDKNTGSLFIADAYFGLLSVGPKGGLATSLVSKDQNLPLKFTNSLDIDQTNRVIYFTDSSQRYTRRDHMLVILTNEKTGRLLKYDLESTNVTVIHNNLTFPNGVTLSQDGNFLLVAETTSCRIMRFWLKTPKAGTCEVFADLPGYPDNIKRNQQGEFWVAIVTSHIGKGKGEGLAVKLGVNGEILEILEDVHGKRWKYASEVMERDGNLWIGSVENNVAIKLKI

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G621610
TK1151 IDTkA01G621610
OH-1004 IDLXL04_000301
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)88.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G621610
LocationChr01:156869677-156870582 (+)
DescriptionSimilar to SSL10: Protein STRICTOSIDINE SYNTHASE-LIKE 10
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g57030 Protein STRICTOSIDINE SYNTHASE-LIKE 10. No verified direct reference in this release
At2g41290 Protein STRICTOSIDINE SYNTHASE-LIKE 2. No verified direct reference in this release
At1g08470 Protein STRICTOSIDINE SYNTHASE-LIKE 3. No verified direct reference in this release
At2g41300 Protein STRICTOSIDINE SYNTHASE-LIKE 1. No verified direct reference in this release
At3g59530 Required for the exine formation during pollen development. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000301 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009555 pollen development Biological Process
GO:0010584 pollen exine formation Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005576 extracellular region Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009505 plant-type cell wall Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G08470
ath:AT2G41290
ath:AT2G41300
ath:AT3G57030
ath:AT3G59530
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.343
Rank 1 · TkA01G621610 · TK1151
Cytoplasm0.230
Rank 2 · TkA01G621610 · TK1151
Lysosome / Vacuole0.219
Rank 3 · TkA01G621610 · TK1151
Endoplasmic reticulum0.130
Rank 4 · TkA01G621610 · TK1151
Cell membrane0.091
Rank 5 · TkA01G621610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01436NHL10-25 aa
PF03088Str_synth11-25 aa
PF25784BigA_N12-27 aa
PF08450SGL28-176 aa
PF01731Arylesterase52-74 aa
PF25784BigA_N52-101 aa
PF03088Str_synth55-142 aa
PF26550Tricorn_2nd55-136 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G621610PF01436NHL10250.000919.9
TkA01G621610PF03088Str_synth11252.7e-30105.1
TkA01G621610PF25784BigA_N12270.6211.0
TkA01G621610PF08450SGL281761.2e-1455.3
TkA01G621610PF01731Arylesterase52740.0001321.5
TkA01G621610PF25784BigA_N521010.6211.0
TkA01G621610PF03088Str_synth551422.7e-30105.1
TkA01G621610PF26550Tricorn_2nd551360.001618.0
TkA01G621610PF01731Arylesterase991720.0001321.5
TkA01G621610PF06525SoxE1011320.1912.0
TkA01G621610PF01436NHL1101350.000919.9
TkA01G621610PF25784BigA_N1111310.6211.0
TkA01G621610PF07494Reg_prop1621720.0614.3
TkA01G621610PF01436NHL1641720.000919.9
TkA01G621610PF07494Reg_prop1932050.0614.3
TkA01G621610PF25784BigA_N2052120.6211.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q4V3D9Arabidopsis thalianasp|Q4V3D9|SSL10_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 1049.200%Swiss-ProtMedium
Q9SLG8Arabidopsis thalianasp|Q9SLG8|SSL2_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 245.200%Swiss-ProtMedium
Q8VWF6Arabidopsis thalianasp|Q8VWF6|SSL3_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 344.700%Swiss-ProtMedium
F4IJZ6Arabidopsis thalianasp|F4IJZ6|SSL1_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 143.800%Swiss-ProtMedium
Q9M1B4Arabidopsis thalianasp|Q9M1B4|SSL13_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 1342.400%Swiss-ProtMedium

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