TkA01G599850 | RubberDandelionOmics

Gene overview

TkA01G599850

Reference: TK1151 Chr: Chr01 Coordinates: 151076666-151079913 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1452 bp · TkA01G599850|TK1151|cDNA

ATGATAAAGATAGGAGGAGATGGAACTCAGTTTGATACTGAAGAAGATATATACACTAAAGATGGCACAGTTGATTACAGAAACAATCCTGCTAACAAGAAGACCACAGGAACCTGGAAGGCCTGCCCTTTTATTCTTGGGAATGACTTTATTAACAATATCCGCATCAGTCTCGGGTTTAAGCCGGTTTGTGTGACAAAAGATAATTGCCATGCTAGCGGCACAGACGTTGCTCTAACCTTTTTATCACTCTATCTAGT...

CDS

Download CDS FASTA

1452 bp · TkA01G599850|TK1151|CDS

ATGATAAAGATAGGAGGAGATGGAACTCAGTTTGATACTGAAGAAGATATATACACTAAAGATGGCACAGTTGATTACAGAAACAATCCTGCTAACAAGAAGACCACAGGAACCTGGAAGGCCTGCCCTTTTATTCTTGGGAATGACTTTATTAACAATATCCGCATCAGTCTCGGGTTTAAGCCGGTTTGTGTGACAAAAGATAATTGCCATGCTAGCGGCACAGACGTTGCTCTAACCTTTTTATCACTCTATCTAGT...

Protein

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483 aa · TkA01G599850|TK1151|PROTEIN

MIKIGGDGTQFDTEEDIYTKDGTVDYRNNPANKKTTGTWKACPFILGNDFINNIRISLGFKPVCVTKDNCHASGTDVALTFLSLYLVALGTGGIKPCVSSYGADQFDDADEVEKKHKSSFFNWFYFSINIGALIAASLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQKPGGSPLTRICQVIVASWRKRRVHLPDDRSVFCLDKAAIELQSDHVKESVDPWRLCTVTQVEELKSIIKLLPIWATGIIFSAVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G599850`
TK1151 ID	TkA01G599850
OH-1004 ID	LXL04_000608
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G599850

Location Chr01:151076666-151079913 (+)

Description Similar to NPF8.1: Protein NRT1/ PTR FAMILY 8.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At5g01180`	Peptide transporter.	AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At2g02040`	Peptide transporter.	No verified direct reference in this release
`At1g62200`	Protein NRT1/ PTR FAMILY 8.5.	No verified direct reference in this release
`At2g02020`	Protein NRT1/ PTR FAMILY 8.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000608 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0015833 peptide transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G02020

ath:AT2G02040

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.587

Rank 1 · TkA01G599850 · TK1151

Lysosome / Vacuole0.152

Rank 2 · TkA01G599850 · TK1151

Endoplasmic reticulum0.115

Rank 3 · TkA01G599850 · TK1151

Cytoplasm0.078

Rank 4 · TkA01G599850 · TK1151

Golgi apparatus0.048

Rank 5 · TkA01G599850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00854PTR275-439 aa

PF05753TRAP_beta99-143 aa

PF07690MFS_1111-416 aa

PF24369DUF7525130-165 aa

PF24369DUF7525327-344 aa

PF07690MFS_1375-468 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G599850	`PF00854`	PTR2	75	439	6.9e-113	378.2
TkA01G599850	`PF05753`	TRAP_beta	99	143	0.25	11.5
TkA01G599850	`PF07690`	MFS_1	111	416	2.5e-11	43.8
TkA01G599850	`PF24369`	DUF7525	130	165	8.6	7.2
TkA01G599850	`PF24369`	DUF7525	327	344	8.6	7.2
TkA01G599850	`PF07690`	MFS_1	375	468	2.5e-11	43.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M390`	Arabidopsis thaliana	sp\|Q9M390\|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1	64.000%	Swiss-Prot	High
`Q9LFB8`	Arabidopsis thaliana	sp\|Q9LFB8\|PTR5_ARATH Protein NRT1/ PTR FAMILY 8.2	62.900%	Swiss-Prot	High
`P46032`	Arabidopsis thaliana	sp\|P46032\|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3	52.800%	Swiss-Prot	High
`Q93Z20`	Arabidopsis thaliana	sp\|Q93Z20\|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.5	51.300%	Swiss-Prot	High
`Q84WG0`	Arabidopsis thaliana	sp\|Q84WG0\|PTR26_ARATH Protein NRT1/ PTR FAMILY 8.4	43.500%	Swiss-Prot	Medium

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