LXL04_000608 | RubberDandelionOmics

Gene overview

LXL04_000608

Reference: OH-1004 Chr: Chr01 Coordinates: 11021551-11023949 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1740 bp · LXL04_000608|LXL04_000608|OH1004|cDNA

ATGGCTGAAATAAAAGACGCATCCACTAAGTTTGATactgaagaagatatatacacTAAAGATGGCACAGTTGATTACAGAAACAATCCTGCTAACAAGAAGACCACAGGAACCTGGAAGGCCTGCCCTTTTATTCTTGGAAACGAATGTTGTGAAAGATTGGCATATTACGGAATGAGCACAAATCTTTTGctttatttcaaaaataaccTTCATCAACATAGTGCTACCGCCTCCAAAAACCTCTCGAATTGGTCTGG...

CDS

Download CDS FASTA

1740 bp · LXL04_000608|LXL04_000608|OH1004|CDS

ATGGCTGAAATAAAAGACGCATCCACTAAGTTTGATACTGAAGAAGATATATACACTAAAGATGGCACAGTTGATTACAGAAACAATCCTGCTAACAAGAAGACCACAGGAACCTGGAAGGCCTGCCCTTTTATTCTTGGAAACGAATGTTGTGAAAGATTGGCATATTACGGAATGAGCACAAATCTTTTGCTTTATTTCAAAAATAACCTTCATCAACATAGTGCTACCGCCTCCAAAAACCTCTCGAATTGGTCTGG...

Protein

Download Protein FASTA

579 aa · LXL04_000608|LXL04_000608|OH1004|PROTEIN

MAEIKDASTKFDTEEDIYTKDGTVDYRNNPANKKTTGTWKACPFILGNECCERLAYYGMSTNLLLYFKNNLHQHSATASKNLSNWSGTCYITPLLGAFLADAYLGRYWTIAIFSIIYVMGMTLLTISASVSGLKPVCVTKDNCHASGTDVALTFLSLYLVALGTGGIKPCVSSYGADQFDDADEVEKKHKSSFFNWFYFSINIGALIAASLLVWIQDNVGWGWGFGIPAVAMAIAVVSFFSGTRLYRNQKPGGSPLTRIC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000608`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000608

Location Chr01:11021551-11023949 (-)

Description Similar to NPF8.1: Protein NRT1/ PTR FAMILY 8.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At5g01180`	Peptide transporter.	AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At2g02040`	Peptide transporter.	No verified direct reference in this release
`At1g62200`	Protein NRT1/ PTR FAMILY 8.5.	No verified direct reference in this release
`At2g02020`	Protein NRT1/ PTR FAMILY 8.4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000608 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0015833 peptide transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G02020

ath:AT2G02040

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.713

Rank 1 · LXL04_000608 · OH-1004

Lysosome / Vacuole0.094

Rank 2 · LXL04_000608 · OH-1004

Cytoplasm0.086

Rank 3 · LXL04_000608 · OH-1004

Endoplasmic reticulum0.077

Rank 4 · LXL04_000608 · OH-1004

Mitochondrion0.041

Rank 5 · LXL04_000608 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_154-512 aa

PF00854.28PTR2107-535 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000608	`PF07690.22`	MFS_1	54	512	5.6e-15	55.8
LXL04_000608	`PF00854.28`	PTR2	107	535	2.5e-123	412.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M390`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.1	68.850%	Swiss-Prot	strong database homology
`Q9LFB8`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.2	67.372%	Swiss-Prot	strong database homology
`P46032`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.3	58.615%	Swiss-Prot	strong database homology
`Q93Z20`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.5	53.729%	Swiss-Prot	strong database homology
`Q84WG0`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.4	50.600%	Swiss-Prot	strong database homology

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