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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G598010
Reference: TK1151 Chr: Chr01 Coordinates: 150543878-150545735 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1139 bp · TkA01G598010|TK1151|cDNA

AACCCTCACGACTGGCCGCCCTTCTGCCTCCAGAAGCTCCGATTTCGTTTCTACTCGCTATACAACACACAGTTGCTTTTTCGATCTCTGCCGTCTTCAACTTCAATGGCAAGCAACGATCCAGAGCACAAGGAGGAGGAAACCGCCGCAGCCGAAGACGAAGACACTGGAGCACAGATCGCTCCGATCGTTAAGCTTGAAGAAGTCGCTGTCACTACTGGCGAAGAAGATGAAGATGCTATTCTCGATCTTAAAGCCAA...

CDS

Download CDS FASTA

738 bp · TkA01G598010|TK1151|CDS

AACCCTCACGACTGGCCGCCCTTCTGCCTCCAGAAGCTCCGATTTCGTTTCTACTCGCTATACAACACACAGTTGCTTTTTCGATCTCTGCCGTCTTCAACTTCAATGGCAAGCAACGATCCAGAGCACAAGGAGGAGGAAACCGCCGCAGCCGAAGACGAAGACACTGGAGCACAGATCGCTCCGATCGTTAAGCTTGAAGAAGTCGCTGTCACTACTGGCGAAGAAGATGAAGATGCTATTCTCGATCTTAAAGCCAA...

Protein

Download Protein FASTA

245 aa · TkA01G598010|TK1151|PROTEIN

NPHDWPPFCLQKLRFRFYSLYNTQLLFRSLPSSTSMASNDPEHKEEETAAAEDEDTGAQIAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGSVRFLKHKQTGKVRLVMRQSKTLKICANHLVIPTMSVQEHAGNDKSCVWHAADFSDGELKDELFCIRFGSVDNCKKFMETFTEVAESQKEKEENKDASDAAGLLENLKVEDKKEEVKEKEEVKEVTTEKAEEKKEVEASST

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G598010
TK1151 IDTkA01G598010
OH-1004 IDLXL04_000643
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.600
Protein coverage (%)TK1151 88.163 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G598010
LocationChr01:150543878-150545735 (-)
DescriptionSimilar to RANBP1B: Ran-binding protein 1 homolog b
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g30060 Ran-binding protein 1 homolog b. No verified direct reference in this release
At5g58590 Ran-binding protein 1 homolog c. No verified direct reference in this release
At1g07140 Ran-binding protein 1 homolog a. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000643 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0007051 spindle organization Biological Process
GO:0007165 signal transduction Biological Process
GO:0015031 protein transport Biological Process
GO:0046604 positive regulation of mitotic centrosome separation Biological Process
GO:0051028 mRNA transport Biological Process
GO:0051168 nuclear export Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005643 nuclear pore Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G07140
ath:AT2G30060
ath:AT5G58590
hsa:5902
mmu:19385
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.643
Rank 1 · TkA01G598010 · TK1151
Nucleus0.360
Rank 2 · TkA01G598010 · TK1151
Cell membrane0.162
Rank 3 · TkA01G598010 · TK1151
Golgi apparatus0.086
Rank 4 · TkA01G598010 · TK1151
Endoplasmic reticulum0.082
Rank 5 · TkA01G598010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25349PH_PHS110-35 aa
PF18137WHD_ORC42-50 aa
PF23829DUF719943-48 aa
PF00638Ran_BP171-188 aa
PF00568WH181-188 aa
PF22972EVH1_PP4R385-190 aa
PF23829DUF7199133-200 aa
PF22937PDXDC1-like_cen2156-199 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G598010PF25349PH_PHS110350.09313.1
TkA01G598010PF18137WHD_ORC42500.3911.6
TkA01G598010PF23829DUF719943480.4311.7
TkA01G598010PF00638Ran_BP1711881.9e-40138.6
TkA01G598010PF00568WH1811886.7e-0523.5
TkA01G598010PF22972EVH1_PP4R3851903.6e-0524.9
TkA01G598010PF23829DUF71991332000.4311.7
TkA01G598010PF22937PDXDC1-like_cen21561990.01416.2
TkA01G598010PF25349PH_PHS11661970.09313.1
TkA01G598010PF18137WHD_ORC1732390.3911.6
TkA01G598010PF00638Ran_BP11992221.9e-40138.6
TkA01G598010PF22937PDXDC1-like_cen22172380.01416.2
TkA01G598010PF23829DUF71992222370.4311.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWG8Arabidopsis thalianasp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b79.800%Swiss-ProtHigh
P92985Arabidopsis thalianasp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c74.600%Swiss-ProtHigh
Q9LMK7Arabidopsis thalianasp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a73.000%Swiss-ProtHigh

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