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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G580330
Reference: TK1151 Chr: Chr01 Coordinates: 146014615-146015891 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1209 bp · TkA01G580330|TK1151|cDNA

ACATCTATCAAATGGAACCTTCAGCTCCCAGTTCGTTCAATCATCCGTTGTTCCGCCGTCTGCAAGCTCTGGCACTCAATCATCAACGCCCCATTGTTCTCCGCCACCGCTGCATCAGCATCACCCCCCTGGTTCTTCCTCTGCGGCCAAAACAACATTTTCGCGAAAAACAATCAAGCGTTTGCATTCGATCCTGATTCGAACGAGTGGATCAAGCTCCCCACAACTCTCTTTCCTGTTTCAATTCCGCAGGAATCATC...

CDS

Download CDS FASTA

1137 bp · TkA01G580330|TK1151|CDS

ACATCTATCAAATGGAACCTTCAGCTCCCAGTTCGTTCAATCATCCGTTGTTCCGCCGTCTGCAAGCTCTGGCACTCAATCATCAACGCCCCATTGTTCTCCGCCACCGCTGCATCAGCATCACCCCCCTGGTTCTTCCTCTGCGGCCAAAACAACATTTTCGCGAAAAACAATCAAGCGTTTGCATTCGATCCTGATTCGAACGAGTGGATCAAGCTCCCCACAACTCTCTTTCCTGTTTCAATTCCGCAGGAATCATC...

Protein

Download Protein FASTA

378 aa · TkA01G580330|TK1151|PROTEIN

TSIKWNLQLPVRSIIRCSAVCKLWHSIINAPLFSATAASASPPWFFLCGQNNIFAKNNQAFAFDPDSNEWIKLPTTLFPVSIPQESSFIGSGGFFFNIAANNFSYAPILIPSWRETTPLKFSRLNPLVGVISSEFSSNSNPNNGCGRNLNLPRIIVVGGVRFIGGLVDIIDNLAVEIYNPTLNSWDLCPPLPADFRSGNSSQSLSSSFFKSKFYVFGIHSCFISSFDLNNRVWSEVQTLRPPSVIISFLLSCRNQLMLAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G580330
TK1151 IDTkA01G580330
OH-1004 IDLXL04_000857
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 98.148 / OH-1004 93.451
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G580330
LocationChr01:146014615-146015891 (+)
DescriptionSimilar to At3g24760: F-box/kelch-repeat protein At3g24760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g24760 F-box/kelch-repeat protein At3g24760. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000857 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001558 regulation of cell growth Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0008361 regulation of cell size Biological Process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0019005 SCF ubiquitin ligase complex Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G24760
ath:AT4G33160
ath:AT5G42350
ath:AT5G42360
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.516
Rank 1 · TkA01G580330 · TK1151
Cytoplasm0.511
Rank 2 · TkA01G580330 · TK1151
Cell membrane0.068
Rank 3 · TkA01G580330 · TK1151
Endoplasmic reticulum0.061
Rank 4 · TkA01G580330 · TK1151
Plastid0.032
Rank 5 · TkA01G580330 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box8-31 aa
PF12937F-box-like9-31 aa
PF13964Beta-prop_Calicin24-76 aa
PF24681Kelch_KLHDC2_KLHL20_DRC743-76 aa
PF01344Kelch_158-75 aa
PF07646Kelch_263-74 aa
PF07646Kelch_2111-119 aa
PF07646Kelch_2153-192 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G580330PF00646F-box8310.0009819.7
TkA01G580330PF12937F-box-like9316.1e-0523.4
TkA01G580330PF13964Beta-prop_Calicin24760.00815.9
TkA01G580330PF24681Kelch_KLHDC2_KLHL20_DRC743760.000819.5
TkA01G580330PF01344Kelch_158751.8e-0524.9
TkA01G580330PF07646Kelch_263740.0003121.3
TkA01G580330PF07646Kelch_21111190.0003121.3
TkA01G580330PF07646Kelch_21531920.0003121.3
TkA01G580330PF13964Beta-prop_Calicin1542890.00815.9
TkA01G580330PF01344Kelch_11751921.8e-0524.9
TkA01G580330PF24681Kelch_KLHDC2_KLHL20_DRC71752390.000819.5
TkA01G580330PF07646Kelch_22042370.0003121.3
TkA01G580330PF01344Kelch_12082171.8e-0524.9
TkA01G580330PF01344Kelch_12252391.8e-0524.9
TkA01G580330PF01344Kelch_12622891.8e-0524.9
TkA01G580330PF07646Kelch_22692890.0003121.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3EB08Arabidopsis thalianasp|Q3EB08|FBK69_ARATH F-box/kelch-repeat protein At3g2476049.100%Swiss-ProtMedium

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