TkA01G564750 | RubberDandelionOmics

Gene overview

TkA01G564750

Reference: TK1151 Chr: Chr01 Coordinates: 142090931-142091822 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

700 bp · TkA01G564750|TK1151|cDNA

TCTTTTATACGGTTAACAAACTTCAGGTGCGAGTAAAAACATTAAAGGTAAAAATGATGTTTTGTTTGATGTTAATGATGATGATCGAAAGTGTTTGCATCAAAGGAGTGATGAGCGAAGTGTATAACGTTGGGGACTCAGATGGTTGGACAATTTTTGTTAATTCAAGTTATTCCAATTGGGTATCTTCAAAGAAGTTCCGAGTTGGCGATACTCTATGGTTTCATTACGACCCAAAGAGCCACAATGTCGTGCAAGTG...

CDS

Download CDS FASTA

513 bp · TkA01G564750|TK1151|CDS

ATGATGTTTTGTTTGATGTTAATGATGATGATCGAAAGTGTTTGCATCAAAGGAGTGATGAGCGAAGTGTATAACGTTGGGGACTCAGATGGTTGGACAATTTTTGTTAATTCAAGTTATTCCAATTGGGTATCTTCAAAGAAGTTCCGAGTTGGCGATACTCTATGGTTTCATTACGACCCAAAGAGCCACAATGTCGTGCAAGTGAACCAGATGGATTTCCGGTTATGCAACCTAACCGCACCCATAAAAACGTACGA...

Protein

Download Protein FASTA

170 aa · TkA01G564750|TK1151|PROTEIN

MMFCLMLMMMIESVCIKGVMSEVYNVGDSDGWTIFVNSSYSNWVSSKKFRVGDTLWFHYDPKSHNVVQVNQMDFRLCNLTAPIKTYETGNDSFTIEGPGHYYFICSFPGHCKGGQKIDVRVLKKYSETATPPKPVTMAPTSRSVANVVRPSFFFGRIIVVSIILAAISVA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G564750`
TK1151 ID	TkA01G564750
OH-1004 ID	LXL04_036972
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	52.600
Protein coverage (%)	TK1151 77.647 / OH-1004 64.356 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G564750`
Location	Chr01:142090931-142091822 (-)
Description	Similar to Mavicyanin
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036972` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000325 plant-type vacuole Cellular Component GO:0005576 extracellular region Cellular Component GO:0005773 vacuole Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0009507 chloroplast Cellular Component GO:0016020 membrane Cellular Component GO:0048046 apoplast Cellular Component GO:0098552 side of membrane Cellular Component GO:0099503 secretory vesicle Cellular Component GO:0009055 electron transfer activity Molecular Function
KEGG gene cross-reference	ath:AT2G25060 ath:AT4G27520 ath:AT4G28365 ath:AT4G32490 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.771

Rank 1 · TkA01G564750 · TK1151

Extracellular0.087

Rank 2 · TkA01G564750 · TK1151

Endoplasmic reticulum0.082

Rank 3 · TkA01G564750 · TK1151

Cytoplasm0.078

Rank 4 · TkA01G564750 · TK1151

Golgi apparatus0.040

Rank 5 · TkA01G564750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02298Cu_bind_like32-115 aa

PF00127Copper-bind56-119 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G564750	`PF02298`	Cu_bind_like	32	115	1e-27	96.7
TkA01G564750	`PF00127`	Copper-bind	56	119	0.088	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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