LXL04_036972 | RubberDandelionOmics

Gene overview

LXL04_036972

Reference: OH-1004 Chr: Chr08 Coordinates: 51035107-51035795 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

609 bp · LXL04_036972|LXL04_036972|OH1004|cDNA

ATGTCGCTTTACACCGAAAGATTAACAGCAACAACAATAAAAACTTCGTTGTCTATGCTACTAATGATTCAGTTAAGTCTTCTAGCAATAATGGTTAAGGGAGAGGTGTACAAGGTGGGCGATTCTAGTGGTTGGGTTGCTAATACCAACTCCAATTACTCAAATTGGACATCTTCCAAAATCTTTCATGTTCATGATGTTCTTGTGTTCGAATATAATGCAACTAACGATAATGTAATACTAGTGAGTCGCTCTGATTT...

CDS

Download CDS FASTA

609 bp · LXL04_036972|LXL04_036972|OH1004|CDS

ATGTCGCTTTACACCGAAAGATTAACAGCAACAACAATAAAAACTTCGTTGTCTATGCTACTAATGATTCAGTTAAGTCTTCTAGCAATAATGGTTAAGGGAGAGGTGTACAAGGTGGGCGATTCTAGTGGTTGGGTTGCTAATACCAACTCCAATTACTCAAATTGGACATCTTCCAAAATCTTTCATGTTCATGATGTTCTTGTGTTCGAATATAATGCAACTAACGATAATGTAATACTAGTGAGTCGCTCTGATTT...

Protein

Download Protein FASTA

202 aa · LXL04_036972|LXL04_036972|OH1004|PROTEIN

MSLYTERLTATTIKTSLSMLLMIQLSLLAIMVKGEVYKVGDSSGWVANTNSNYSNWTSSKIFHVHDVLVFEYNATNDNVILVSRSDFRSCNTSAPLKTFNSGNDSFTIKAHGHFYFTSGFSGHCVNGQKLDVRVPKASRVTTIPPSKPVTSPSPSPNPSIESKAIAPSPLNNVAASHDPQWLLMSTVGATICGFVAIVGGFV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036972`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_036972

Location Chr08:51035107-51035795 (+)

Description Similar to Mavicyanin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28365`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At4g27520`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At2g25060`	May act as a carbohydrate transporter.	No verified direct reference in this release
`At4g32490`	May act as a carbohydrate transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_036972 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0048046 apoplast Cellular Component

GO:0098552 side of membrane Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0009055 electron transfer activity Molecular Function

KEGG gene cross-reference

ath:AT2G25060

ath:AT4G27520

ath:AT4G28365

ath:AT4G32490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.816

Rank 1 · LXL04_036972 · OH-1004

Endoplasmic reticulum0.092

Rank 2 · LXL04_036972 · OH-1004

Cytoplasm0.063

Rank 3 · LXL04_036972 · OH-1004

Extracellular0.059

Rank 4 · LXL04_036972 · OH-1004

Nucleus0.039

Rank 5 · LXL04_036972 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02298.24Cu_bind_like45-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036972	`PF02298.24`	Cu_bind_like	45	128	1.8e-22	79.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JL85`	Arabidopsis thaliana	Early nodulin-like protein 3	30.357%	Swiss-Prot	moderate database homology
`Q9T076`	Arabidopsis thaliana	Early nodulin-like protein 2	38.843%	Swiss-Prot	moderate database homology
`Q9SK27`	Arabidopsis thaliana	Early nodulin-like protein 14	35.135%	Swiss-Prot	moderate database homology
`Q84JV2`	Arabidopsis thaliana	Early nodulin-like protein 4	29.885%	Swiss-Prot	weak database homology

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