TkA01G563410 | RubberDandelionOmics

Gene overview

TkA01G563410

Reference: TK1151 Chr: Chr01 Coordinates: 141648566-141650610 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1215 bp · TkA01G563410|TK1151|cDNA

AATAACTTAGATAAATGATTCATTTATATATTTGTTGTTCTCCAAACTTCCAGAAGAAATGAACTATACGTGGAAGTTCAAGAAGTTCAAGTGGTTTTTTACCATATAAAAGGGAGAGCAGCGGCGTCGCCGTCGATTTCGTGCCCACTGGATAGGAGGGAGAGAGAGAGAGATGGCGCAGCTTACTGTGATTCTGTACATGCTTACAATTTCTCTGTTTACGGTCACCTCCTCCGCATCGCAGTGTTCTACCAACGGTA...

CDS

Download CDS FASTA

570 bp · TkA01G563410|TK1151|CDS

ATGGCGCAGCTTACTGTGATTCTGTACATGCTTACAATTTCTCTGTTTACGGTCACCTCCTCCGCATCGCAGTGTTCTACCAACGGTATTCCCTTAGTGAGAAATATCAATGAGCTACCACAAGATAACTATGGAAGGCCTGGGCTGTCTCACATTACTGTTGCAGGTTCTCTTATGCATGGGCTGAAAGAGGTTGAGATATGGCTTCAGACATTTGCTCCAGGAACACACACTCCAATTCACAGACACTCATGTGAGGA...

Protein

Download Protein FASTA

189 aa · TkA01G563410|TK1151|PROTEIN

MAQLTVILYMLTISLFTVTSSASQCSTNGIPLVRNINELPQDNYGRPGLSHITVAGSLMHGLKEVEIWLQTFAPGTHTPIHRHSCEEVFIVLKGSGTLYLSSNSHSKSPGKPEEFSVSSNTTFYIPVNDVHQLWNTNDKEDLQVLVVISRPPVKIFMYDDWLMPHTAAKLKFPYYWDEQCYQTNSKDEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G563410`
TK1151 ID	TkA01G563410
OH-1004 ID	LXL04_001069
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G563410

Location Chr01:141648566-141650610 (-)

Description Similar to T85: Auxin-binding protein T85

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02980`	Auxin receptor that controls cell elongation and cell division.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001069 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010928 regulation of auxin mediated signaling pathway Biological Process

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0045793 positive regulation of cell size Biological Process

GO:0051781 positive regulation of cell division Biological Process

GO:0005788 endoplasmic reticulum lumen Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT4G02980

zma:542294

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.314

Rank 1 · TkA01G563410 · TK1151

Endoplasmic reticulum0.274

Rank 2 · TkA01G563410 · TK1151

Golgi apparatus0.271

Rank 3 · TkA01G563410 · TK1151

Cytoplasm0.124

Rank 4 · TkA01G563410 · TK1151

Cell membrane0.071

Rank 5 · TkA01G563410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02041Auxin_BP22-189 aa

PF00190Cupin_162-155 aa

PF16867DMSP_lyase64-98 aa

PF07883Cupin_268-147 aa

PF19480DUF601669-98 aa

PF12973Cupin_771-96 aa

PF02311AraC_binding74-145 aa

PF06865Ppnp84-130 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G563410	`PF02041`	Auxin_BP	22	189	3.3e-94	313.9
TkA01G563410	`PF00190`	Cupin_1	62	155	1e-05	25.9
TkA01G563410	`PF16867`	DMSP_lyase	64	98	0.00094	19.7
TkA01G563410	`PF07883`	Cupin_2	68	147	6.1e-11	42.6
TkA01G563410	`PF19480`	DUF6016	69	98	0.0078	16.5
TkA01G563410	`PF12973`	Cupin_7	71	96	0.16	12.5
TkA01G563410	`PF02311`	AraC_binding	74	145	0.034	14.6
TkA01G563410	`PF06865`	Ppnp	84	130	0.087	13.9
TkA01G563410	`PF03531`	SSrecog	114	144	0.11	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P33487`	Arabidopsis thaliana	sp\|P33487\|ABP1_ARATH Auxin-binding protein 1	70.700%	Swiss-Prot	High

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