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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G558070
Reference: TK1151 Chr: Chr01 Coordinates: 140356296-140370562 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4906 bp · TkA01G558070|TK1151|cDNA

TTTTCATCATATGATATGCAACATGATTTCAATAATATTTCCGTGTAGTGGGTATTAATTTATCTGACTTTTTGAATTTCAACGAAGAACACATACATCGAATTCGTAAACTGTTGCTCAGATGTCAACGATGCAGATATAGAAATCGTGAGTTGACACTGAATCTTTGGTGGTTTTAATGGCTTCTTCATCATGGATGACCTCACTTTCCTGTTCTTCAAGCTCTGTTGTGGCGGAGGACGCCTCAAGCGTACTCCAGT...

CDS

Download CDS FASTA

4527 bp · TkA01G558070|TK1151|CDS

ATGGCTTCTTCATCATGGATGACCTCACTTTCCTGTTCTTCAAGCTCTGTTGTGGCGGAGGACGCCTCAAGCGTACTCCAGTGGCCGAGGTTCATCTTCCTCTCTCCCTGCGGTCAAAGGGCACTTTTATCCTCCATTGATGTCCTCTTCCTGCTCATCCTCCTCTTTTTTGCTATTCAAAAGCTCTTTTCAAGATTCACCTCCAACACCTCCGTCAACGAAGAACCTCTTCTTCCCAAAAGTAGAGCAGTTGTCAAACC...

Protein

Download Protein FASTA

1508 aa · TkA01G558070|TK1151|PROTEIN

MASSSWMTSLSCSSSSVVAEDASSVLQWPRFIFLSPCGQRALLSSIDVLFLLILLFFAIQKLFSRFTSNTSVNEEPLLPKSRAVVKPNVWFKISLLVTSILVVLSIVSSILAFTRNTQMPWKLIDGICWVIQALTFLVITVLIIHEKRFQALTHPLSLRVFWLINFIVIALMASSSTIRLVSDTRNTTQLKSEDIVSLISLPFSVFLLILSINGSTGIIVKTESEAVNGNGHINGKVSEGDDLSKSIKVSGWASASILSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G558070
TK1151 IDTkA01G558070
OH-1004 IDLXL04_001142
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.700
Protein coverage (%)TK1151 99.934 / OH-1004 96.541
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G558070
LocationChr01:140356296-140370562 (-)
DescriptionSimilar to ABCC4: ABC transporter C family member 4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g47800 Involved in the regulation of stomatal aperture. No verified direct reference in this release
At3g62700 Pump for glutathione S-conjugates. No verified direct reference in this release
At1g04120 Pump for glutathione S-conjugates.
The Arabidopsis thaliana ABC transporter AtMRP5 controls root development and stomata movement.2001 · DOI: 10.1093/emboj/20.8.1875
The plant multidrug resistance ABC transporter AtMRP5 is involved in guard cell hormonal signalling and water use.2003 · DOI: 10.1046/j.1365-313x.2003.016012.x
Binding of sulfonylurea by AtMRP5, an Arabidopsis multidrug resistance-related protein that functions in salt tolerance.2004 · DOI: 10.1104/pp.103.027045
The Arabidopsis ATP-binding cassette protein AtMRP5/AtABCC5 is a high affinity inositol hexakisphosphate transporter involved in guard cell signaling and phytate storage.2009 · DOI: 10.1074/jbc.m109.030247

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: A2XCD4 ABC transporter that may affect phytic acid transport and compartmentalization. No verified direct reference in this release
Os03g0142800 ABC transporter that may affect phytic acid transport and compartmentalization.
Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds.2009 · DOI: 10.1007/s00122-009-1018-1
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001142 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009611 response to wounding Biological Process
GO:0009624 response to nematode Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010118 stomatal movement Biological Process
GO:0030007 intracellular potassium ion homeostasis Biological Process
GO:0055085 transmembrane transport Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G04120
ath:AT2G47800
ath:AT3G62700
dosa:Os03g0142800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.368
Rank 1 · TkA01G558070 · TK1151
Lysosome / Vacuole0.340
Rank 2 · TkA01G558070 · TK1151
Endoplasmic reticulum0.150
Rank 3 · TkA01G558070 · TK1151
Cytoplasm0.132
Rank 4 · TkA01G558070 · TK1151
Golgi apparatus0.101
Rank 5 · TkA01G558070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24358ABCC10_N9-215 aa
PF00664ABC_membrane42-71 aa
PF05767Pox_A1495-147 aa
PF00664ABC_membrane328-593 aa
PF03193RsgA_GTPase657-701 aa
PF00005ABC_tran660-793 aa
PF20703nSTAND1661-689 aa
PF13476AAA_23662-688 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G558070PF24358ABCC10_N92150.3511.0
TkA01G558070PF00664ABC_membrane42711.4e-60206.0
TkA01G558070PF05767Pox_A14951470.2512.2
TkA01G558070PF00664ABC_membrane3285931.4e-60206.0
TkA01G558070PF03193RsgA_GTPase6577010.004517.6
TkA01G558070PF00005ABC_tran6607939.9e-49166.2
TkA01G558070PF20703nSTAND16616890.1912.0
TkA01G558070PF13476AAA_236626882.79.3
TkA01G558070PF01580FtsK_SpoIIIE6646910.08113.1
TkA01G558070PF13555AAA_296656870.001918.7
TkA01G558070PF00006ATP-synt_ab6656962.88.2
TkA01G558070PF25199nSTAND_NTPase56687000.04714.2
TkA01G558070PF02463SMC_N6718362.5e-0834.4
TkA01G558070PF13604AAA_306717130.007616.7
TkA01G558070PF13191AAA_166717070.01316.7
TkA01G558070PF00931NB-ARC6717380.02315.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q7DM58Arabidopsis thalianasp|Q7DM58|AB4C_ARATH ABC transporter C family member 468.700%Swiss-ProtHigh
Q9LZJ5Arabidopsis thalianasp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 1467.700%Swiss-ProtHigh
Q7GB25Arabidopsis thalianasp|Q7GB25|AB5C_ARATH ABC transporter C family member 542.700%Swiss-ProtMedium
A2XCD4Oryza sativa subsp. indicasp|A2XCD4|AB13C_ORYSI ABC transporter C family member 1342.100%Swiss-ProtMedium
Q10RX7Oryza sativa subsp. japonicasp|Q10RX7|AB13C_ORYSJ ABC transporter C family member 1342.100%Swiss-ProtMedium

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