TkA01G550390 | RubberDandelionOmics

Gene overview

TkA01G550390

Reference: TK1151 Chr: Chr01 Coordinates: 138346532-138347430 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

594 bp · TkA01G550390|TK1151|cDNA

ATGGCTGCCGGAATCATTCGTCTCTACTTCCATGACTGTTTTGTCAGAGGTTGCGATGCTTCACTTCTACTTAAGACGGTACCCGGCGATGAAACAGAGTCGGAGCAAGATAACGGAGCTAACGCCGGCAGTCTGAGAGGGCTCGAGATAATCGATCAAGCTAAAGCAAAGATAGAAGCTGCATGCCCGAATACTGTCTCATGTGCCGACATCTTAGCATTTGCAGCAAGAGATAGCACTTACATTGCCGTTAACGGCAC...

CDS

Download CDS FASTA

594 bp · TkA01G550390|TK1151|CDS

ATGGCTGCCGGAATCATTCGTCTCTACTTCCATGACTGTTTTGTCAGAGGTTGCGATGCTTCACTTCTACTTAAGACGGTACCCGGCGATGAAACAGAGTCGGAGCAAGATAACGGAGCTAACGCCGGCAGTCTGAGAGGGCTCGAGATAATCGATCAAGCTAAAGCAAAGATAGAAGCTGCATGCCCGAATACTGTCTCATGTGCCGACATCTTAGCATTTGCAGCAAGAGATAGCACTTACATTGCCGTTAACGGCAC...

Protein

Download Protein FASTA

197 aa · TkA01G550390|TK1151|PROTEIN

MAAGIIRLYFHDCFVRGCDASLLLKTVPGDETESEQDNGANAGSLRGLEIIDQAKAKIEAACPNTVSCADILAFAARDSTYIAVNGTRTDPSMDPRYAAVLKKKCPKSRGSGTVDLDLVTPNRLDGQYYSNVKQHKVMFKSDQTLIDSKFTATLVAKYSSNLSAWRNDFGAAMVRLGSLDVLTGKKGEIRKKCGVRN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G550390`
TK1151 ID	TkA01G550390
OH-1004 ID	LXL04_001258
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	63.300
Protein coverage (%)	TK1151 98.985 / OH-1004 40.888 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G550390

Location Chr01:138346532-138347430 (-)

Description Similar to GSVIVT00037159001: Peroxidase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At4g26010`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g05240`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g05250`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g40150`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001258 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G17820

nsy:104248753

zma:542029

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.788

Rank 1 · TkA01G550390 · TK1151

Cytoplasm0.111

Rank 2 · TkA01G550390 · TK1151

Lysosome / Vacuole0.049

Rank 3 · TkA01G550390 · TK1151

Endoplasmic reticulum0.028

Rank 4 · TkA01G550390 · TK1151

Cell membrane0.026

Rank 5 · TkA01G550390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase1-83 aa

PF00141peroxidase88-161 aa

PF20330DUF6625113-172 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G550390	`PF00141`	peroxidase	1	83	1.5e-45	156.6
TkA01G550390	`PF00141`	peroxidase	88	161	1.5e-45	156.6
TkA01G550390	`PF20330`	DUF6625	113	172	0.16	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43729`	Arabidopsis thaliana	sp\|Q43729\|PER57_ARATH Peroxidase 57	33.200%	Swiss-Prot	Medium
`Q93V93`	Arabidopsis thaliana	sp\|Q93V93\|PER44_ARATH Peroxidase 44	33.200%	Swiss-Prot	Medium
`P0DI10`	Arabidopsis thaliana	sp\|P0DI10\|PER1_ARATH Peroxidase 1	31.400%	Swiss-Prot	Medium
`Q67Z07`	Arabidopsis thaliana	sp\|Q67Z07\|PER2_ARATH Peroxidase 2	31.400%	Swiss-Prot	Medium
`Q9FL16`	Arabidopsis thaliana	sp\|Q9FL16\|PER63_ARATH Peroxidase 63	30.900%	Swiss-Prot	Medium

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