LXL04_001258 | RubberDandelionOmics

Gene overview

LXL04_001258

Reference: OH-1004 Chr: Chr01 Coordinates: 22972188-22975530 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1962 bp · LXL04_001258|LXL04_001258|OH1004|cDNA

ATGATGAAAATGTATTGGGCAGTTACAAGGTTCATGAAGCTCTGCATTTTGTGCCTGCTTCCGATGACTTTAGACACAACAAAAGCTCAAAAGCAGCTGAAAGTGGGGTTCTACAAAACGACATGTCCGGCGGCTGAGCAAATAGTGCGGGATACAGTGAACACGGCAGTCACCGCCGACCCAGGCATTGCTGCCGGAATCATTCGTCTCTACTTCCACGACTGCTTTGTCAGGGGTTGCGATGCTTCAATTCTACTTAA...

CDS

Download CDS FASTA

1962 bp · LXL04_001258|LXL04_001258|OH1004|CDS

ATGATGAAAATGTATTGGGCAGTTACAAGGTTCATGAAGCTCTGCATTTTGTGCCTGCTTCCGATGACTTTAGACACAACAAAAGCTCAAAAGCAGCTGAAAGTGGGGTTCTACAAAACGACATGTCCGGCGGCTGAGCAAATAGTGCGGGATACAGTGAACACGGCAGTCACCGCCGACCCAGGCATTGCTGCCGGAATCATTCGTCTCTACTTCCACGACTGCTTTGTCAGGGGTTGCGATGCTTCAATTCTACTTAA...

Protein

Download Protein FASTA

653 aa · LXL04_001258|LXL04_001258|OH1004|PROTEIN

MMKMYWAVTRFMKLCILCLLPMTLDTTKAQKQLKVGFYKTTCPAAEQIVRDTVNTAVTADPGIAAGIIRLYFHDCFVRGCDASILLKTVPGTKPDSEQDDGANGGSLRGLEIIDQAKSNIEAACPNTVSCADILAFAARDSTTIAGGFSYAIPSGRRDGRVSNILEVNLPSPESDVDALTKEFVGKGLSVKDMVALSGAHSIGRAGCGFVAPRLYSFNGGTGTDPSMDPNYAAAMKKKCPKSGASGTADLDLVTPNRLDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001258`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001258

Location Chr01:22972188-22975530 (+)

Description Similar to GSVIVT00037159001: Peroxidase 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g17820`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001258 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004601 peroxidase activity Molecular Function

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G17820

nsy:104248753

zma:542029

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.803

Rank 1 · LXL04_001258 · OH-1004

Lysosome / Vacuole0.068

Rank 2 · LXL04_001258 · OH-1004

Cell membrane0.048

Rank 3 · LXL04_001258 · OH-1004

Endoplasmic reticulum0.042

Rank 4 · LXL04_001258 · OH-1004

Extracellular0.039

Rank 5 · LXL04_001258 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141.29peroxidase49-295 aa

PF03647.19Tmemb_14554-644 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001258	`PF00141.29`	peroxidase	49	295	1.2e-79	268.2
LXL04_001258	`PF03647.19`	Tmemb_14	554	644	4.1e-19	69.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q43729`	Arabidopsis thaliana	Peroxidase 57	45.946%	Swiss-Prot	weak database homology

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