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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G539510
Reference: TK1151 Chr: Chr01 Coordinates: 135275868-135278907 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1273 bp · TkA01G539510|TK1151|cDNA

TCTCAGTCAAACAAATTCTTGGTCTACGTCGACTCACATTATTCATTCTCTCTGGGACCTTCGCCTAATTCAGTTTCCACCGCCATGAACATCATCATCATCATCGTCTAGAAAATTTATCATTTTGGATCTGAAATTCCACACACAAAAAACAATGTCAAGTGGCAACAATACACATTGGTGTTACCAATGCCAAGTACCAGTCCGTATTCGGGGCCGTAATCCAGTGTGCCCATATTGCTCCAGTGGATTCATCCAAG...

CDS

Download CDS FASTA

831 bp · TkA01G539510|TK1151|CDS

ATGTCAAGTGGCAACAATACACATTGGTGTTACCAATGCCAAGTACCAGTCCGTATTCGGGGCCGTAATCCAGTGTGCCCATATTGCTCCAGTGGATTCATCCAAGACCTAACCGAAGTAACCGACCCGGGTCCCACCCATGAACCGTCCGATTATGGGTTCATGGAAGACCCGTACCCGGACCCACGAAACCGGATCATGGACGCGTTTGCCGAACTCATAAGACAAAGAATGTCGGGAAGAAACCCTAATTTTGATGT...

Protein

Download Protein FASTA

276 aa · TkA01G539510|TK1151|PROTEIN

MSSGNNTHWCYQCQVPVRIRGRNPVCPYCSSGFIQDLTEVTDPGPTHEPSDYGFMEDPYPDPRNRIMDAFAELIRQRMSGRNPNFDVRRRSGLVPDHGVVPWFIFDGQAPARMSANDRFEFFFNGAPPVPGPGPGPRRSNVSNVFMGPGLQELIEQLTVTANGQGPPPATRSAIDSMPTIRITNRHLNTDSHCPVCKDRFELGSEAREMPCGHIYHSGCIEPWLVQHNSCPVCREELPAQGGSRGSTSGGGGGGEESGGG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G539510
TK1151 IDTkA01G539510
OH-1004 IDLXL04_018545
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)32.100
Protein coverage (%)TK1151 98.188 / OH-1004 52.967
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G539510
LocationChr01:135275868-135278907 (-)
DescriptionSimilar to CAM53: Calmodulin-related protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g40830 Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro. No verified direct reference in this release
At3g56580 E3 ubiquitin-protein ligase that promotes osmotic stress and abscisic acid (ABA) responses.
The atrzf1 mutation of the novel RING-type E3 ubiquitin ligase increases proline contents and enhances drought tolerance in Arabidopsis.2013 · DOI: 10.1016/j.plantsci.2012.12.007
PCA22 acts as a suppressor of atrzf1 to mediate proline accumulation in response to abiotic stress in Arabidopsis.2017 · DOI: 10.1093/jxb/erx069
At3g19950 E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. No verified direct reference in this release
At5g59550 E3 ubiquitin-protein ligase involved in the positive regulation of abscisic acid-dependent drought stress responses.
Suppression of Arabidopsis RING-DUF1117 E3 ubiquitin ligases, AtRDUF1 and AtRDUF2, reduces tolerance to ABA-mediated drought stress.2012 · DOI: 10.1016/j.bbrc.2012.02.131

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_018545 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016460 myosin II complex Cellular Component
GO:0005509 calcium ion binding Molecular Function
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.716
Rank 1 · TkA01G539510 · TK1151
Nucleus0.540
Rank 2 · TkA01G539510 · TK1151
Endoplasmic reticulum0.064
Rank 3 · TkA01G539510 · TK1151
Mitochondrion0.055
Rank 4 · TkA01G539510 · TK1151
Cell membrane0.050
Rank 5 · TkA01G539510 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23413zf_RING_Vps8_fungal1-14 aa
PF23412zf_RING_Vps84-13 aa
PF15227zf-C3HC4_45-13 aa
PF14369Zn_ribbon_196-36 aa
PF17120zf-RING_166-30 aa
PF22191IBR_16-19 aa
PF18717CxC47-34 aa
PF12773DZR7-31 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G539510PF23413zf_RING_Vps8_fungal1142.38.3
TkA01G539510PF23412zf_RING_Vps84132.78.6
TkA01G539510PF15227zf-C3HC4_45131.99.4
TkA01G539510PF14369Zn_ribbon_196362e-0938.2
TkA01G539510PF17120zf-RING_166300.07113.5
TkA01G539510PF22191IBR_16190.1512.7
TkA01G539510PF18717CxC47340.04214.4
TkA01G539510PF12773DZR7310.6910.8
TkA01G539510PF01155HypA7321.49.7
TkA01G539510PF13639zf-RING_28291.3e-1351.7
TkA01G539510PF23475zf-Tbcl_FmdE8130.2711.4
TkA01G539510PF13923zf-C3HC4_29292.1e-0937.8
TkA01G539510PF13920zf-C3HC4_39312.2e-0628.1
TkA01G539510PF00097zf-C3HC410294.8e-0730.3
TkA01G539510PF14634zf-RING_510300.0001222.7
TkA01G539510PF07191Zn_ribbon_610320.4411.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O22197Arabidopsis thalianasp|O22197|RHC1A_ARATH Probable E3 ubiquitin-protein ligase RHC1A49.000%Swiss-ProtMedium
Q94AK4Arabidopsis thalianasp|Q94AK4|RZF1_ARATH E3 ubiquitin-protein ligase RZF146.500%Swiss-ProtMedium
Q8LPN7Arabidopsis thalianasp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like33.600%Swiss-ProtMedium
Q940T5Arabidopsis thalianasp|Q940T5|RDUF2_ARATH E3 ubiquitin-protein ligase RDUF233.800%Swiss-ProtMedium

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