TkA01G535350 | RubberDandelionOmics

Gene overview

TkA01G535350

Reference: TK1151 Chr: Chr01 Coordinates: 134346502-134348004 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1423 bp · TkA01G535350|TK1151|cDNA

ATTATAACACCCTTTTAACAATGCTGAAATAAATGAGTTATGACCTGATGAATATCTTGGCATGCGGACTGTACAAGAGTTTGAAATGTGACCATGCACAGCCACACACAGCCTCCTTACCCATTTACCCACCACCGTCTTCTACGCCAAGGAACTCCACTCGTGAAATTGTTGACCATTCAATTCCATTCTGTCATGTCCCCCCGGCCCCCACCTCCAAACATAATCTGTGGCATAGCATATCCACTATGTTCCGGTGA...

CDS

Download CDS FASTA

1047 bp · TkA01G535350|TK1151|CDS

ATGAAGAGCTCTGCAGTTTCCTCCACTGTACTCTCCCCATCTTCACGAGCCTCTTTACACCTCCAATTCCGTCCACTTCTCATTTGCCCCACCGCAAAATGCTCCTTCCCTATCCTCCTCCGATCATTACCGCCACCAATCACCTCCACTCCTCACCGTCTGTTCCTCTTCACCACTTCCAATCCCTCAATCTTTACTCCACTCCTGAAACCCATCAGACCCTTTTCAGCATCATCGTCGAATGACGACAATTCGATCAC...

Protein

Download Protein FASTA

348 aa · TkA01G535350|TK1151|PROTEIN

MKSSAVSSTVLSPSSRASLHLQFRPLLICPTAKCSFPILLRSLPPPITSTPHRLFLFTTSNPSIFTPLLKPIRPFSASSSNDDNSITVESSKFQLQGAKIVLSVSVGLIVRFVIPQPDEVTPEAWQLFSIFLSTISGLVLSPLPVGAWAFLGLTTTVVTKTLTFSTAFSAFSNEVIWLIVISFFFARGFVKTGLGDRIATYFVKWLGKSTLGLSYGLTLSEVLIAPAMPSTTARAGGVFLPIIKSLSLSAGSKPNDPSSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G535350`
TK1151 ID	TkA01G535350
OH-1004 ID	LXL04_017148
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.500
Protein coverage (%)	TK1151 94.540 / OH-1004 50.835 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G535350

Location Chr01:134346502-134348004 (+)

Description Similar to DIT2-1: Dicarboxylate transporter 2.1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g64290`	Glutamate/malate translocator involved with DIT1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway.	The Arabidopsis mutant dct is deficient in the plastidic glutamate/malate translocator DiT2.2003 · DOI: 10.1046/j.1365-313x.2003.01806.x
`At5g64280`	May be involved in the transport of dicarboxylate compounds.	No verified direct reference in this release
`At5g12860`	2-oxoglutarate/malate translocator involved with DIT2-1 in primary ammonia assimilation and in the re-assimilation of ammonia generated by the photorespiratory pathway.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017148 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009624 response to nematode Biological Process

GO:0015729 oxaloacetate transport Biological Process

GO:0015742 alpha-ketoglutarate transport Biological Process

GO:0015743 malate transport Biological Process

GO:0015813 L-glutamate transmembrane transport Biological Process

GO:0019676 ammonia assimilation cycle Biological Process

GO:0071423 malate transmembrane transport Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009536 plastid Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

KEGG gene cross-reference

ath:AT5G12860

ath:AT5G64280

ath:AT5G64290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.964

Rank 1 · TkA01G535350 · TK1151

Mitochondrion0.037

Rank 2 · TkA01G535350 · TK1151

Nucleus0.015

Rank 3 · TkA01G535350 · TK1151

Cytoplasm0.013

Rank 4 · TkA01G535350 · TK1151

Cell membrane0.012

Rank 5 · TkA01G535350 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20563DUF677389-114 aa

PF00939Na_sulph_symp99-299 aa

PF29813YddC99-122 aa

PF03600CitMHS138-254 aa

PF29813YddC149-173 aa

PF20563DUF6773150-198 aa

PF29813YddC178-199 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G535350	`PF20563`	DUF6773	89	114	0.27	11.8
TkA01G535350	`PF00939`	Na_sulph_symp	99	299	4.1e-58	198.3
TkA01G535350	`PF29813`	YddC	99	122	0.43	11.3
TkA01G535350	`PF03600`	CitMHS	138	254	2.8e-10	40.5
TkA01G535350	`PF29813`	YddC	149	173	0.43	11.3
TkA01G535350	`PF20563`	DUF6773	150	198	0.27	11.8
TkA01G535350	`PF29813`	YddC	178	199	0.43	11.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FMF7`	Arabidopsis thaliana	sp\|Q9FMF7\|DIT21_ARATH Dicarboxylate transporter 2.1, chloroplastic	68.800%	Swiss-Prot	High
`Q9FMF8`	Arabidopsis thaliana	sp\|Q9FMF8\|DIT22_ARATH Dicarboxylate transporter 2.2, chloroplastic	73.300%	Swiss-Prot	Medium
`Q9LXV3`	Arabidopsis thaliana	sp\|Q9LXV3\|DIT1_ARATH Dicarboxylate transporter 1, chloroplastic	53.700%	Swiss-Prot	Medium

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