TkA01G515620 | RubberDandelionOmics

Gene overview

TkA01G515620

Reference: TK1151 Chr: Chr01 Coordinates: 129208452-129211689 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2282 bp · TkA01G515620|TK1151|cDNA

GCGGAAGAAGAATCGGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCGCTCGCTCTCCACTATATAAGCTTTTCTCACCTATAGCACACACTTCTTCCTCTCTGGTGTCTCCGGCAACCGGTGAATAGATCATGTTTTATTTGTGTATGCGTACGAGAATTGCTTGGAGTTTTCGCTAATTGGATGCTGTGTATGTCGAAATAATTAGGGTTATTGTGACTGATACACCCACTTTAAGCTCCTCAAC...

CDS

Download CDS FASTA

1140 bp · TkA01G515620|TK1151|CDS

ATGGGGTCTGCATGTTGTGTTGCAGCTAGAGATAGAACAATAACAAATGGACCAAGTAATGACGTCATCCCAAGAAATATCCGGTACTCTCCCTCATGGAGTGTTAGGTGGGACAACAGGCGCCGTGTAGCAGGGGAAGATTCCTCCATAACATGGTATTCCGATAGTGCTGCCACAAATGACAGGCTGGACAACAAATCCCAAACAACCGCTTATGCATCAGAAGACGGGAGTCCACTAGAAAGTTTCAGAAATCTGAC...

Protein

Download Protein FASTA

379 aa · TkA01G515620|TK1151|PROTEIN

MGSACCVAARDRTITNGPSNDVIPRNIRYSPSWSVRWDNRRRVAGEDSSITWYSDSAATNDRLDNKSQTTAYASEDGSPLESFRNLTWQKSSPSHQSGILPDTSLSKNPTKLSSSSSPSPSTHSLSSSQPQFPRGPTRSPPRGLLRQVSDTRVPFPTKSPSFSISEDGSPFMVPGFGSTCGSYGGSSDFTNSTNNNNSFDSESFNFKATRASSSPSIDTRTCGVCAKLLTEKSSWGPQKIIAGNELAVVAILICGHVYHA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G515620`
TK1151 ID	TkA01G515620
OH-1004 ID	LXL04_001737
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.400
Protein coverage (%)	TK1151 98.417 / OH-1004 55.689 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA01G515620`
Location	Chr01:129208452-129211689 (-)
Description	Similar to UBP21: Ubiquitin carboxyl-terminal hydrolase 21
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_001737` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006281 DNA repair Biological Process GO:0006508 proteolysis Biological Process GO:0007283 spermatogenesis Biological Process GO:0016579 protein deubiquitination Biological Process GO:0030154 cell differentiation Biological Process GO:0031647 regulation of protein stability Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004843 cysteine-type deubiquitinase activity Molecular Function
KEGG gene cross-reference	ath:AT4G17895 ath:AT5G46740 hsa:84132 mmu:76800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.467

Rank 1 · TkA01G515620 · TK1151

Nucleus0.382

Rank 2 · TkA01G515620 · TK1151

Cytoplasm0.346

Rank 3 · TkA01G515620 · TK1151

Endoplasmic reticulum0.053

Rank 4 · TkA01G515620 · TK1151

Plastid0.035

Rank 5 · TkA01G515620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29452FAR1_N218-230 aa

PF22908PHD_NSD220-277 aa

PF17120zf-RING_16220-226 aa

PF12678zf-rbx1221-280 aa

PF12861zf-ANAPC11221-289 aa

PF13445zf-RING_UBOX222-278 aa

PF14634zf-RING_5222-280 aa

PF13923zf-C3HC4_2222-231 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G515620	`PF29452`	FAR1_N	218	230	0.12	13.1
TkA01G515620	`PF22908`	PHD_NSD	220	277	0.0091	17.0
TkA01G515620	`PF17120`	zf-RING_16	220	226	0.22	11.9
TkA01G515620	`PF12678`	zf-rbx1	221	280	9.5e-05	23.3
TkA01G515620	`PF12861`	zf-ANAPC11	221	289	0.054	14.3
TkA01G515620	`PF13445`	zf-RING_UBOX	222	278	0.0017	19.0
TkA01G515620	`PF14634`	zf-RING_5	222	280	0.0022	18.6
TkA01G515620	`PF13923`	zf-C3HC4_2	222	231	0.016	15.7
TkA01G515620	`PF15227`	zf-C3HC4_4	222	230	0.45	11.4
TkA01G515620	`PF00097`	zf-C3HC4	233	280	0.00029	21.4
TkA01G515620	`PF23555`	zf-RING_Vps41	243	270	7e-05	23.1
TkA01G515620	`PF23412`	zf_RING_Vps8	248	266	0.0006	20.3
TkA01G515620	`PF13639`	zf-RING_2	249	280	4.4e-05	24.4
TkA01G515620	`PF17123`	zf-RING_11	249	263	0.019	15.3
TkA01G515620	`PF23413`	zf_RING_Vps8_fungal	251	280	0.00057	19.8
TkA01G515620	`PF13923`	zf-C3HC4_2	251	280	0.016	15.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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