Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2007 bp · LXL04_001737|LXL04_001737|OH1004|cDNA
ATGAGAAGGAGTCGACGAGAAGGAATCGGCGAGAATGAAGCAGTCGATCGTTCCTGTGGAACCGATGATCTTGGCGAATCGCGGTTTGTTACTAATCCTAAGACATTATGGGTTCAAGTGGTGAAATCAGTTCATGGGGATGCTGGAATGTTCAAGGATAAATGGGTCGGGAAAGTTGCTCTAGAGGTGGCATTTCCTATATTAGCAGCTTTGGAGATTGACATTGATCAAAAAATTATCGATAGACGTGAAAATAACGA...
2007 bp · LXL04_001737|LXL04_001737|OH1004|CDS
ATGAGAAGGAGTCGACGAGAAGGAATCGGCGAGAATGAAGCAGTCGATCGTTCCTGTGGAACCGATGATCTTGGCGAATCGCGGTTTGTTACTAATCCTAAGACATTATGGGTTCAAGTGGTGAAATCAGTTCATGGGGATGCTGGAATGTTCAAGGATAAATGGGTCGGGAAAGTTGCTCTAGAGGTGGCATTTCCTATATTAGCAGCTTTGGAGATTGACATTGATCAAAAAATTATCGATAGACGTGAAAATAACGA...
Protein
Download Protein FASTA668 aa · LXL04_001737|LXL04_001737|OH1004|PROTEIN
MRRSRREGIGENEAVDRSCGTDDLGESRFVTNPKTLWVQVVKSVHGDAGMFKDKWVGKVALEVAFPILAALEIDIDQKIIDRRENNDWKWRWKSDIRHFSSSFQRYQQENAHEFLQCFLDRLESSFTNLKLKDVAFSSQSNNLVKQVFGGRVISKLRCCNCNHISDTYEPSVDLSLEIDYANTLSTALESFTKVEHIGDEEMKFTCDNGKEKVSVHRLDLGSWVKFEFAGPETIKAHNFIRENRWEYVSLHTLLPLWCLR...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001737 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001737 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:32211645-32222420 (+) | |||||||||
| Description | Similar to UBP21: Ubiquitin carboxyl-terminal hydrolase 21 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0006508 proteolysis Biological Process GO:0007283 spermatogenesis Biological Process GO:0016579 protein deubiquitination Biological Process GO:0030154 cell differentiation Biological Process GO:0031647 regulation of protein stability Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0004843 cysteine-type deubiquitinase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT4G17895 ath:AT5G46740 hsa:84132 mmu:76800 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00443.36UCH95-233 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001737 | PF00443.36 | UCH | 95 | 233 | 5.1e-11 | 43.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.