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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G515040
Reference: TK1151 Chr: Chr01 Coordinates: 129052765-129056686 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2909 bp · TkA01G515040|TK1151|cDNA

CTAGTTTTACATCCTATGCCCCATTATTCAACGCTGGAAGCCCAGTATTAAGCCCACTTCAACTTCTTGGCGCCTAACAACAGCTCAATCTCCCGCCAAAAAGTCAGAAGATACCCTTTTACTCTCCACTGGTTAACCTACACACCATTGTTGCATCTCAATCTCCCGCCCTCCGGACTCCAGAAACTGAAAATGGCATCTGACTCTTCTCCGGTTAATACTCCCGGCGGACCTTCGTCAACTGATGATGGAATATCAAG...

CDS

Download CDS FASTA

2508 bp · TkA01G515040|TK1151|CDS

ATGGCATCTGACTCTTCTCCGGTTAATACTCCCGGCGGACCTTCGTCAACTGATGATGGAATATCAAGTCCAATCGGGAACACATTTTCGTCTCCGAATACTACTCGCACCAGCCGTCGTAAGCGCGGTCGGCCGTCTGCGTCATTCAATACGCCGCCAGCACCACCATCTACCCGATTCAACAACACACCTGACCCTACCCCGACCCCTAATTCTGCTGCTCCCTCGTCGCGTCGTGGTGGCAGAGGGAGAGCCAGCTC...

Protein

Download Protein FASTA

835 aa · TkA01G515040|TK1151|PROTEIN

MASDSSPVNTPGGPSSTDDGISSPIGNTFSSPNTTRTSRRKRGRPSASFNTPPAPPSTRFNNTPDPTPTPNSAAPSSRRGGRGRASSIPPTPSTDDVPPSSEGGEEDEANGAPAMFVWGTSISVQDVNAAILRFLRHFREHPSHIEGKYMKAINHVIEVEGESLEVDANDVFDYDNDLYTKMVRYPLEVLAIFDIVLMDMVSRINPLFEKHIQARIFNMKTSTSMRNLNPSDIEKMVSVKGMVIRCSSIIPEIREAVFRC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G515040
TK1151 IDTkA01G515040
OH-1004 IDLXL04_001754
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G515040
LocationChr01:129052765-129056686 (+)
DescriptionSimilar to MCM4: DNA replication licensing factor MCM4
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g16440 Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0544450 Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001754 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000727 double-strand break repair via break-induced replication Biological Process
GO:0006260 DNA replication Biological Process
GO:0006270 DNA replication initiation Biological Process
GO:0006271 DNA strand elongation involved in DNA replication Biological Process
GO:0006279 premeiotic DNA replication Biological Process
GO:0009555 pollen development Biological Process
GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process
GO:0033260 nuclear DNA replication Biological Process
GO:0044786 cell cycle DNA replication Biological Process
GO:1902975 mitotic DNA replication initiation Biological Process
GO:0000347 THO complex Cellular Component
GO:0000785 chromatin Cellular Component
KEGG gene cross-reference
ath:AT2G16440
spo:2539164
xla:397843
xtr:448137
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.934
Rank 1 · TkA01G515040 · TK1151
Cytoplasm0.133
Rank 2 · TkA01G515040 · TK1151
Mitochondrion0.031
Rank 3 · TkA01G515040 · TK1151
Cell membrane0.016
Rank 4 · TkA01G515040 · TK1151
Endoplasmic reticulum0.007
Rank 5 · TkA01G515040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30488DUF8618113-142 aa
PF14551MCM_N130-218 aa
PF26066MCM9_N155-222 aa
PF17207MCM_OB225-354 aa
PF07726AAA_3296-320 aa
PF21128WHD_MCM4402-421 aa
PF00493MCM413-635 aa
PF13191AAA_16457-505 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G515040PF30488DUF86181131420.03914.9
TkA01G515040PF14551MCM_N1302181.2e-1455.1
TkA01G515040PF26066MCM9_N1552220.004717.6
TkA01G515040PF17207MCM_OB2253542.2e-41141.3
TkA01G515040PF07726AAA_32963200.009616.5
TkA01G515040PF21128WHD_MCM44024211.6e-0938.4
TkA01G515040PF00493MCM4136351.2e-100336.0
TkA01G515040PF13191AAA_164575050.009517.2
TkA01G515040PF00158Sigma54_activat4614940.001119.3
TkA01G515040PF01078Mg_chelatase4674942.6e-0834.2
TkA01G515040PF07728AAA_54705863.4e-0731.1
TkA01G515040PF13401AAA_224706010.2412.5
TkA01G515040PF00004AAA4715620.01816.2
TkA01G515040PF07726AAA_35175850.009616.5
TkA01G515040PF00158Sigma54_activat5195750.001119.3
TkA01G515040PF01078Mg_chelatase5205872.6e-0834.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WVF5Arabidopsis thalianasp|Q0WVF5|MCM4_ARATH DNA replication licensing factor MCM477.700%Swiss-ProtHigh
Q5JKB0Oryza sativa subsp. japonicasp|Q5JKB0|MCM4_ORYSJ DNA replication licensing factor MCM478.600%Swiss-ProtHigh

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