LXL04_001754 | RubberDandelionOmics

Gene overview

LXL04_001754

Reference: OH-1004 Chr: Chr01 Coordinates: 32531246-32534765 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2508 bp · LXL04_001754|LXL04_001754|OH1004|cDNA

ATGGCATCTGACTCTTCTCCGGTTAATACTCCCGGCGGACCTTCGtcaactgatgatggaataTCAAGTCCAATCGGGAACACATTTTCGTCTCCGAATACTACTCGCACCAGCCGTCGTAAGCGCGGTCGGCCGTCTGCGTCATTCAATACGCCGCCAGCACCACCATCTACCCGATTCAACAACACACCTGACCCTACCCCGACCCCTAATTCTGCTGCTCCCTCGTCGCGTCGTGGTGGCAGAGGGAGAGCCAGCTC...

CDS

Download CDS FASTA

2508 bp · LXL04_001754|LXL04_001754|OH1004|CDS

ATGGCATCTGACTCTTCTCCGGTTAATACTCCCGGCGGACCTTCGTCAACTGATGATGGAATATCAAGTCCAATCGGGAACACATTTTCGTCTCCGAATACTACTCGCACCAGCCGTCGTAAGCGCGGTCGGCCGTCTGCGTCATTCAATACGCCGCCAGCACCACCATCTACCCGATTCAACAACACACCTGACCCTACCCCGACCCCTAATTCTGCTGCTCCCTCGTCGCGTCGTGGTGGCAGAGGGAGAGCCAGCTC...

Protein

Download Protein FASTA

835 aa · LXL04_001754|LXL04_001754|OH1004|PROTEIN

MASDSSPVNTPGGPSSTDDGISSPIGNTFSSPNTTRTSRRKRGRPSASFNTPPAPPSTRFNNTPDPTPTPNSAAPSSRRGGRGRASSIPPTPSTDDVPPSSEGGEEDEANGAPAMFVWGTSISVQDVNAAILRFLRHFREHPSHIEGKYMKAINHVIEVEGESLEVDANDVFDYDNDLYTKMVRYPLEVLAIFDIVLMDMVSRINPLFEKHIQARIFNMKTSTSMRNLNPSDIEKMVSVKGMVIRCSSIIPEIREAVFRC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001754`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001754

Location Chr01:32531246-32534765 (-)

Description Similar to MCM4: DNA replication licensing factor MCM4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g16440`	Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0544450`	Probable component of the MCM2-7 complex (MCM complex) that may function as a DNA helicase and which is essential to undergo a single round of replication initiation and elongation per cell cycle in eukaryotic cells.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001754 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000727 double-strand break repair via break-induced replication Biological Process

GO:0006260 DNA replication Biological Process

GO:0006270 DNA replication initiation Biological Process

GO:0006271 DNA strand elongation involved in DNA replication Biological Process

GO:0006279 premeiotic DNA replication Biological Process

GO:0009555 pollen development Biological Process

GO:0030174 regulation of DNA-templated DNA replication initiation Biological Process

GO:0033260 nuclear DNA replication Biological Process

GO:0044786 cell cycle DNA replication Biological Process

GO:1902975 mitotic DNA replication initiation Biological Process

GO:0000347 THO complex Cellular Component

GO:0000785 chromatin Cellular Component

KEGG gene cross-reference

ath:AT2G16440

spo:2539164

xla:397843

xtr:448137

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.933

Rank 1 · LXL04_001754 · OH-1004

Cytoplasm0.134

Rank 2 · LXL04_001754 · OH-1004

Mitochondrion0.031

Rank 3 · LXL04_001754 · OH-1004

Cell membrane0.016

Rank 4 · LXL04_001754 · OH-1004

Endoplasmic reticulum0.007

Rank 5 · LXL04_001754 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14551.12MCM_N130-218 aa

PF17207.10MCM_OB225-354 aa

PF00493.30MCM413-635 aa

PF07728.21AAA_5470-586 aa

PF01078.28Mg_chelatase520-587 aa

PF17855.8MCM_lid651-737 aa

PF21128.6WHD_MCM4761-835 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001754	`PF14551.12`	MCM_N	130	218	1.2e-14	55.2
LXL04_001754	`PF17207.10`	MCM_OB	225	354	2.2e-41	141.3
LXL04_001754	`PF00493.30`	MCM	413	635	1.2e-100	336.0
LXL04_001754	`PF07728.21`	AAA_5	470	586	3.4e-07	31.0
LXL04_001754	`PF01078.28`	Mg_chelatase	520	587	2.6e-08	34.2
LXL04_001754	`PF17855.8`	MCM_lid	651	737	1.1e-26	93.8
LXL04_001754	`PF21128.6`	WHD_MCM4	761	835	2.9e-09	37.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q0WVF5`	Arabidopsis thaliana	DNA replication licensing factor MCM4	72.792%	Swiss-Prot	strong database homology
`Q5JKB0`	Oryza sativa subsp. japonica	DNA replication licensing factor MCM4	73.956%	Swiss-Prot	strong database homology

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