RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G498680
Reference: TK1151 Chr: Chr01 Coordinates: 124964974-124970800 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4101 bp · TkA01G498680|TK1151|cDNA

AAATTAGGGCTTTATTCTAGGTTCTGTGATATATTCTGATTCCTTTTAATCCGTCTATAAATTAGTAAAAAGGCGGGAAACTAGCCCTAATTGGGTGCGACTCATAGCAATCTCCATTCCAATTTCCCAACACAATTCCTTCGTATCTACTTATCTTTCTAACACCCAAATCCCACAATCTGAAGAACAGGCGAAAAATTCTAAAACCCTAAATTGAGCTGATTGGATGGAGATCTCACCCAATTCGGATACCAAACTCC...

CDS

Download CDS FASTA

3081 bp · TkA01G498680|TK1151|CDS

ATGGAGATCTCACCCAATTCGGATACCAAACTCCCTGTTCGTCGGCGATTGATTCAGTCGACACTAATCCCCCACAAGTCTCAAGACAATGCCGTCAGTGTAGACGAAGATCTCGAACCTGATGTAGACCAGGAAGATGATGATGAGGAGTATTGCGGGAGTCAGAGTCGAGCCAGGAAAAACAAAAAGCGAAAACCAAAATTAGTGTCTCAATCACGAGTTTCAACGAAGGTTGCTGTAAACGGGAATGAAACTGGAGC...

Protein

Download Protein FASTA

1026 aa · TkA01G498680|TK1151|PROTEIN

MEISPNSDTKLPVRRRLIQSTLIPHKSQDNAVSVDEDLEPDVDQEDDDEEYCGSQSRARKNKKRKPKLVSQSRVSTKVAVNGNETGAKNTEEEDSPATVKCDFFLKVSERRQLQKQKKEQLPIQSPDKNDQNQDLELDVDQEDDEDEEYSLSQSQAKKNKKRKPKAVSQSRPSRKLAVNKNEIEVKNAEEEDSPATVKCDFFLKVSERRNQRRPKKEHTPVKIEQSCSPSDAIANSKTPRKTRRRASSTPKKQTPSKNGV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G498680
TK1151 IDTkA01G498680
OH-1004 IDLXL04_001915
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.900
Protein coverage (%)TK1151 99.220 / OH-1004 83.511
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G498680
LocationChr01:124964974-124970800 (-)
DescriptionSimilar to Atad5: ATPase family AAA domain-containing protein 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001915 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000278 mitotic cell cycle Biological Process
GO:0006261 DNA-templated DNA replication Biological Process
GO:0006272 leading strand elongation Biological Process
GO:0006281 DNA repair Biological Process
GO:0006298 mismatch repair Biological Process
GO:0006974 DNA damage response Biological Process
GO:0008283 cell population proliferation Biological Process
GO:0033260 nuclear DNA replication Biological Process
GO:0042770 signal transduction in response to DNA damage Biological Process
GO:0045740 positive regulation of DNA replication Biological Process
GO:0051301 cell division Biological Process
GO:1901990 regulation of mitotic cell cycle phase transition Biological Process
KEGG gene cross-reference
hsa:79915
mmu:237877
sce:YOR217W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.951
Rank 1 · TkA01G498680 · TK1151
Cytoplasm0.117
Rank 2 · TkA01G498680 · TK1151
Cell membrane0.026
Rank 3 · TkA01G498680 · TK1151
Mitochondrion0.015
Rank 4 · TkA01G498680 · TK1151
Endoplasmic reticulum0.011
Rank 5 · TkA01G498680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13671AAA_3348-74 aa
PF13671AAA_33197-221 aa
PF03215Rad17426-457 aa
PF25199nSTAND_NTPase5499-525 aa
PF03215Rad17502-635 aa
PF13555AAA_29502-523 aa
PF00437T2SSE504-526 aa
PF20720nSTAND3504-538 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G498680PF13671AAA_3348740.8110.7
TkA01G498680PF13671AAA_331972210.8110.7
TkA01G498680PF03215Rad174264573.4e-0627.8
TkA01G498680PF25199nSTAND_NTPase54995250.1512.6
TkA01G498680PF03215Rad175026353.4e-0627.8
TkA01G498680PF13555AAA_295025230.0813.4
TkA01G498680PF00437T2SSE5045260.1111.8
TkA01G498680PF20720nSTAND35045380.1612.4
TkA01G498680PF13401AAA_225045390.1912.7
TkA01G498680PF13191AAA_165055420.2312.7
TkA01G498680PF13671AAA_335065420.8110.7
TkA01G498680PF00004AAA5076627.8e-0523.9
TkA01G498680PF20720nSTAND35796420.1612.4
TkA01G498680PF25361AAA_lid_RFC16737140.0001122.3
TkA01G498680PF21960RCF1-5-like_lid6737070.03614.8
TkA01G498680PF21960RCF1-5-like_lid7847960.03614.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser