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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G496590
Reference: TK1151 Chr: Chr01 Coordinates: 124275250-124278478 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2465 bp · TkA01G496590|TK1151|cDNA

TTTTAAAGATTTTCTAGGATCTTTCCTCCATAACTCAACTTTTCTATATATACAACCTAGTACTTAAGAATTCCACAACACAAAAGTACACGCCACCAAACCAACAACCATTAAAGATGATAAAGTTTGCAAAAACGGCATCCTTTTACGCATCATTGATTCTCATCATCCTGTTAACATCAGACGTTACATGTCGGGTTATACACGACACCACCTCCAACTTAATCTCAGATGGCACTAATACCGATCCAACTAGAGAT...

CDS

Download CDS FASTA

2145 bp · TkA01G496590|TK1151|CDS

ATGATAAAGTTTGCAAAAACGGCATCCTTTTACGCATCATTGATTCTCATCATCCTGTTAACATCAGACGTTACATGTCGGGTTATACACGACACCACCTCCAACTTAATCTCAGATGGCACTAATACCGATCCAACTAGAGATAATCTCAAGACCTCATCTTTCTTACACCTCAAAGGAATCGATGATATTAATGAAGAACAACAACATTGTGAGCAAATGTATGGGTTTCTTCCATGTTCTGAAAACCTCATGGGCCA...

Protein

Download Protein FASTA

714 aa · TkA01G496590|TK1151|PROTEIN

MIKFAKTASFYASLILIILLTSDVTCRVIHDTTSNLISDGTNTDPTRDNLKTSSFLHLKGIDDINEEQQHCEQMYGFLPCSENLMGHLFLIVVYEYLLFHGESYVASGGKRIFQILGPGIFGASAFQVLGFLPESLILLVSGLSDTKDGAQEYVLTGVGLLAGSGILILTLLWGTCVMIGSRKFPSESGSIPSAIPNQNRLQKLLSLCTGSGVITDEETNHAAKIMVLSVIPFAFLLIPELFGAKITRGYVLTIALPISV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G496590
TK1151 IDTkA01G496590
OH-1004 IDLXL04_001943
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 92.717 / OH-1004 49.403
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G496590
LocationChr01:124275250-124278478 (+)
DescriptionSimilar to NCL2: Sodium/calcium exchanger NCL2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g53210 Possesses sodium/calcium exchanger (NCX) activity when expressed in a heterologous mammalian CHO-K1 cell system. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0247800 May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis. No verified direct reference in this release
Os01g0212400 May function as a sodium/calcium exchanger (NCX) and participate in the maintenance of calcium homeostasis. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001943 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006814 sodium ion transport Biological Process
GO:0006874 intracellular calcium ion homeostasis Biological Process
GO:0055074 calcium ion homeostasis Biological Process
GO:0070588 calcium ion transmembrane transport Biological Process
GO:0071472 cellular response to salt stress Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT1G53210
dosa:Os02g0247800
osa:4328874
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.614
Rank 1 · TkA01G496590 · TK1151
Lysosome / Vacuole0.170
Rank 2 · TkA01G496590 · TK1151
Endoplasmic reticulum0.135
Rank 3 · TkA01G496590 · TK1151
Cytoplasm0.088
Rank 4 · TkA01G496590 · TK1151
Golgi apparatus0.050
Rank 5 · TkA01G496590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01699Na_Ca_ex116-272 aa
PF00036EF-hand_1210-218 aa
PF13202EF-hand_5210-218 aa
PF30624EF_SSP120284-306 aa
PF23564EF-hand_FSTL1288-378 aa
PF25578EF-hand_STIM1300-342 aa
PF13499EF-hand_7309-340 aa
PF10591SPARC_Ca_bdg310-379 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G496590PF01699Na_Ca_ex1162722e-1041.5
TkA01G496590PF00036EF-hand_12102189.4e-1863.1
TkA01G496590PF13202EF-hand_52102182.7e-0833.6
TkA01G496590PF30624EF_SSP1202843060.01916.4
TkA01G496590PF23564EF-hand_FSTL12883781.1e-0939.5
TkA01G496590PF25578EF-hand_STIM13003420.4911.2
TkA01G496590PF13499EF-hand_73093409.8e-2174.6
TkA01G496590PF10591SPARC_Ca_bdg3103794e-0524.6
TkA01G496590PF13499EF-hand_73163819.8e-2174.6
TkA01G496590PF25825SAPC2_N3163410.2212.1
TkA01G496590PF00036EF-hand_13173439.4e-1863.1
TkA01G496590PF13405EF-hand_63173421.8e-1555.8
TkA01G496590PF13202EF-hand_53173402.7e-0833.6
TkA01G496590PF13833EF-hand_83183422.3e-0524.7
TkA01G496590PF28844BamM_C3213436.37.6
TkA01G496590PF26330DUF80853344100.009116.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8L636Arabidopsis thalianasp|Q8L636|NCL_ARATH Sodium/calcium exchanger NCL34.300%Swiss-ProtMedium
Q6K3R5Oryza sativa subsp. japonicasp|Q6K3R5|NCL2_ORYSJ Sodium/calcium exchanger NCL237.500%Swiss-ProtMedium
Q5QNI2Oryza sativa subsp. japonicasp|Q5QNI2|NCL1_ORYSJ Sodium/calcium exchanger NCL136.700%Swiss-ProtMedium

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