TkA01G479490 | RubberDandelionOmics

Gene overview

TkA01G479490

Reference: TK1151 Chr: Chr01 Coordinates: 120117275-120121410 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1408 bp · TkA01G479490|TK1151|cDNA

CACACACGTACATGCATAAATATCATTTCGCTTCCAAGACTAATAAATTGATCATCAACCAATAATACTTTGAACTCCCATCGGAAACACAAACCACCGAAGACCACCAAAAACAACCGTCATGGACTCCATTATCAAGTCCCTCTTGCTTCTCTTAACCACCACCACATCTGCAGCAATCTTCGTCTCCGCCCTGGTACTCGTTCTGCTCACCTTCCTTTTCATTAACAACCACCGGCCATGGAAAATATCGTCACCTG...

CDS

Download CDS FASTA

1512 bp · TkA01G479490|TK1151|CDS

ATGGACTCCATTATCAAGTCCCTCTTGCTTCTCTTAACCACCACCACATCTGCAGCAATCTTCGTCTCCGCCCTGGTACTCGTTCTGCTCACCTTCCTTTTCATTAACAACCACCGGCCATGGAAAATATCGTCACCTGTACCACCATCGTCGTCGTCGGCGGTAGTTAGGAGGATTCTCTTAGGAACCATGGGATGGCCTTTCGTCGGCGAAACCCTAGATTTCATATCCTGTGGTTACACAGATCATCCTCAATCATT...

Protein

Download Protein FASTA

503 aa · TkA01G479490|TK1151|PROTEIN

MDSIIKSLLLLLTTTTSAAIFVSALVLVLLTFLFINNHRPWKISSPVPPSSSSAVVRRILLGTMGWPFVGETLDFISCGYTDHPQSFMDKRRLLYGKVFKSHLFGSPTIVSTDAEVSRFVLQSDANSFVPSYPKSLTELMGESSILRINGSLHRRIHGLIGSFFKSPYLKAQITSEMRKLLLQSMATWNEDSPIYIQDETKHIAFQVLVKALIGLDPGEEMEYLRIQFQKFIAGLMSLPVKLPGTQLHRSLQAKKKMLNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G479490`
TK1151 ID	TkA01G479490
OH-1004 ID	LXL04_002142
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	96.600
Protein coverage (%)	TK1151 99.801 / OH-1004 99.016 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G479490

Location Chr01:120117275-120121410 (+)

Description Similar to CYP90D1: 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13730`	Involved in brassinosteroid (BR) biosynthesis.	CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02330.x C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis.2006 · DOI: 10.1105/tpc.106.045443
`At4g36380`	Involved in brassinosteroid (BR) biosynthesis.	Changes in the shapes of leaves and flowers upon overexpression of cytochrome P450 in Arabidopsis.1999 · DOI: 10.1073/pnas.96.16.9433 CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02330.x C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis.2006 · DOI: 10.1105/tpc.106.045443 The ROTUNDIFOLIA3 gene of Arabidopsis thaliana encodes a new member of the cytochrome P-450 family that is required for the regulated polar elongation of leaf cells.1998 · DOI: 10.1101/gad.12.15.2381

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0197100`	Catalyzes the C6-oxidation step in brassinosteroids biosynthesis.	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450.2003 · DOI: 10.1105/tpc.014712
`UniProt: A2WLP4`	Catalyzes the C6-oxidation step in brassinosteroids biosynthesis (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002142 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009965 leaf morphogenesis Biological Process

GO:0010268 brassinosteroid homeostasis Biological Process

GO:0016125 sterol metabolic process Biological Process

GO:0016132 brassinosteroid biosynthetic process Biological Process

GO:0042814 monopolar cell growth Biological Process

GO:0048366 leaf development Biological Process

GO:0048441 petal development Biological Process

GO:0048443 stamen development Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G13730

ath:AT4G36380

bdi:100839691

dosa:Os01g0197100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.866

Rank 1 · TkA01G479490 · TK1151

Golgi apparatus0.052

Rank 2 · TkA01G479490 · TK1151

Plastid0.046

Rank 3 · TkA01G479490 · TK1151

Nucleus0.039

Rank 4 · TkA01G479490 · TK1151

Cell membrane0.035

Rank 5 · TkA01G479490 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45065-479 aa

PF14239RRXRR175-257 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G479490	`PF00067`	p450	65	479	6.5e-53	180.8
TkA01G479490	`PF14239`	RRXRR	175	257	0.083	13.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94IA6`	Arabidopsis thaliana	sp\|Q94IA6\|C90D1_ARATH 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1	65.500%	Swiss-Prot	High
`Q9M066`	Arabidopsis thaliana	sp\|Q9M066\|C90C1_ARATH 3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1	53.300%	Swiss-Prot	High
`Q94IW5`	Oryza sativa subsp. japonica	sp\|Q94IW5\|C90D2_ORYSJ Cytochrome P450 90D2	63.100%	Swiss-Prot	High
`A2WLP4`	Oryza sativa subsp. indica	sp\|A2WLP4\|C90D2_ORYSI Cytochrome P450 90D2	63.200%	Swiss-Prot	High

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