LXL04_002142 | RubberDandelionOmics

Gene overview

LXL04_002142

Reference: OH-1004 Chr: Chr01 Coordinates: 42588155-42592437 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1527 bp · LXL04_002142|LXL04_002142|OH1004|cDNA

ATGGACTCCATTATCAAGTCCCTCTTGCTTCTCTTAACCACCACCACATCTGCAGCAATCTTCGTCTCCGCCCTGGTACTCGTTCTGCTCACCTTCCTTTCCATTAACAACCACCGGCCATGGAAAATATCGTCACCTGTACCACCATCGTCGTCGGCGGCGGTAGTTAGGAGGATTCTCTTAGGAACCATGGGATGGCCTTTCATCGGCGAAACCCTAGATTTCATATCCTGTGGTTACACAGATCATCCTCAATCATT...

CDS

Download CDS FASTA

1527 bp · LXL04_002142|LXL04_002142|OH1004|CDS

ATGGACTCCATTATCAAGTCCCTCTTGCTTCTCTTAACCACCACCACATCTGCAGCAATCTTCGTCTCCGCCCTGGTACTCGTTCTGCTCACCTTCCTTTCCATTAACAACCACCGGCCATGGAAAATATCGTCACCTGTACCACCATCGTCGTCGGCGGCGGTAGTTAGGAGGATTCTCTTAGGAACCATGGGATGGCCTTTCATCGGCGAAACCCTAGATTTCATATCCTGTGGTTACACAGATCATCCTCAATCATT...

Protein

Download Protein FASTA

508 aa · LXL04_002142|LXL04_002142|OH1004|PROTEIN

MDSIIKSLLLLLTTTTSAAIFVSALVLVLLTFLSINNHRPWKISSPVPPSSSAAVVRRILLGTMGWPFIGETLDFISCGYTDHPQSFMDKRRLLYGKVFKSHLFGSPTIVSTDAEVSRFVLQSDANSFVPSYPKSLTELMGESSILRINGSLHRRIHGLIGSFFKSPYLKAQITSEMRKLLLQSMATWNEDSPIYIQDETKHIAFQVLVKALIGLDPGEEMEYLRIQFQKFIAGLMSLPVKLPGTQLHRSLQAKKKMLNL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002142`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_002142

Location Chr01:42588155-42592437 (-)

Description Similar to CYP90D1: 3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g13730`	Involved in brassinosteroid (BR) biosynthesis.	CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02330.x C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis.2006 · DOI: 10.1105/tpc.106.045443
`At4g36380`	Involved in brassinosteroid (BR) biosynthesis.	Changes in the shapes of leaves and flowers upon overexpression of cytochrome P450 in Arabidopsis.1999 · DOI: 10.1073/pnas.96.16.9433 CYP90C1 and CYP90D1 are involved in different steps in the brassinosteroid biosynthesis pathway in Arabidopsis thaliana.2005 · DOI: 10.1111/j.1365-313x.2004.02330.x C-23 hydroxylation by Arabidopsis CYP90C1 and CYP90D1 reveals a novel shortcut in brassinosteroid biosynthesis.2006 · DOI: 10.1105/tpc.106.045443 The ROTUNDIFOLIA3 gene of Arabidopsis thaliana encodes a new member of the cytochrome P-450 family that is required for the regulated polar elongation of leaf cells.1998 · DOI: 10.1101/gad.12.15.2381

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0197100`	Catalyzes the C6-oxidation step in brassinosteroids biosynthesis.	A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450.2003 · DOI: 10.1105/tpc.014712
`UniProt: A2WLP4`	Catalyzes the C6-oxidation step in brassinosteroids biosynthesis (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002142 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009965 leaf morphogenesis Biological Process

GO:0010268 brassinosteroid homeostasis Biological Process

GO:0016125 sterol metabolic process Biological Process

GO:0016132 brassinosteroid biosynthetic process Biological Process

GO:0042814 monopolar cell growth Biological Process

GO:0048366 leaf development Biological Process

GO:0048441 petal development Biological Process

GO:0048443 stamen development Biological Process

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005506 iron ion binding Molecular Function

KEGG gene cross-reference

ath:AT3G13730

ath:AT4G36380

bdi:100839691

dosa:Os01g0197100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.850

Rank 1 · LXL04_002142 · OH-1004

Plastid0.054

Rank 2 · LXL04_002142 · OH-1004

Golgi apparatus0.051

Rank 3 · LXL04_002142 · OH-1004

Nucleus0.042

Rank 4 · LXL04_002142 · OH-1004

Cell membrane0.036

Rank 5 · LXL04_002142 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067.28p45065-480 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002142	`PF00067.28`	p450	65	480	1.1e-52	180.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94IA6`	Arabidopsis thaliana	3-epi-6-deoxocathasterone 23-monooxygenase CYP90D1	65.306%	Swiss-Prot	strong database homology
`Q9M066`	Arabidopsis thaliana	3-epi-6-deoxocathasterone 23-monooxygenase CYP90C1	54.299%	Swiss-Prot	strong database homology
`Q94IW5`	Oryza sativa subsp. japonica	Cytochrome P450 90D2	62.780%	Swiss-Prot	strong database homology
`A2WLP4`	Oryza sativa subsp. indica	Cytochrome P450 90D2	62.556%	Swiss-Prot	strong database homology

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