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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G458760
Reference: TK1151 Chr: Chr01 Coordinates: 114884729-114888171 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2416 bp · TkA01G458760|TK1151|cDNA

ATGGCCTTCAGCTTCTCCACTTCAAAATCGCTACACTCCCATAACAAACTTCGTTCCTTCACTCTCTGTAAGTGTCCATCTACTCTTTCTTCCAGCTTCAACAATTCCTCACATGGCTTTCCCATCTTATCACCAAACAAACACTCAAAATTCTCACCTTTTCTTCTTCAAGCACACATCACCACGCATCAAGAAAACTCAAAACCCACAATTAGTCGTAGAATTATTGAAAAAACTCAACAGGGGTTTTCATCGTTCGA...

CDS

Download CDS FASTA

2244 bp · TkA01G458760|TK1151|CDS

ATGGCCTTCAGCTTCTCCACTTCAAAATCGCTACACTCCCATAACAAACTTCGTTCCTTCACTCTCTGTAAGTGTCCATCTACTCTTTCTTCCAGCTTCAACAATTCCTCACATGGCTTTCCCATCTTATCACCAAACAAACACTCAAAATTCTCACCTTTTCTTCTTCAAGCACACATCACCACGCATCAAGAAAACTCAAAACCCACAATTAGTCGTAGAATTATTGAAAAAACTCAACAGGGGTTTTCATCGTTCGA...

Protein

Download Protein FASTA

747 aa · TkA01G458760|TK1151|PROTEIN

MAFSFSTSKSLHSHNKLRSFTLCKCPSTLSSSFNNSSHGFPILSPNKHSKFSPFLLQAHITTHQENSKPTISRRIIEKTQQGFSSFESKDERVDKIPVKHEKRVVKENDKHTRNRAGSNRAKHKGSHEKISKNTAPEGGHLGTGKRFKTPKKGKFESPLLILRLGLEICSKLGDVMGAIAIFDLAKREGINLGQYHYAIILYLCSSASIGVVQPAKSGRSDTTSNNPELSNYNSQNFEGFQTLDELIHLIKDHEGAITRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G458760
TK1151 IDTkA01G458760
OH-1004 IDLXL04_002530
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G458760
LocationChr01:114884729-114888171 (-)
DescriptionSimilar to PRORP1: Proteinaceous RNase P 1, chloroplastic/mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g32230 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.
A single Arabidopsis organellar protein has RNase P activity.2010 · DOI: 10.1038/nsmb.1812
Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing.2012 · DOI: 10.1073/pnas.1209062109
At2g16650 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors.
Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes.2016 · DOI: 10.1016/j.jmb.2015.11.025
At4g21900 Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002530 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0001682 tRNA 5'-leader removal Biological Process
GO:0006397 mRNA processing Biological Process
GO:0008033 tRNA processing Biological Process
GO:0043144 sno(s)RNA processing Biological Process
GO:0097745 mitochondrial tRNA 5'-end processing Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0030678 mitochondrial ribonuclease P complex Cellular Component
GO:0042645 mitochondrial nucleoid Cellular Component
GO:0004526 ribonuclease P activity Molecular Function
KEGG gene cross-reference
ath:AT2G16650
ath:AT2G32230
ath:AT4G21900
hsa:9692
rno:299050
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.864
Rank 1 · TkA01G458760 · TK1151
Mitochondrion0.108
Rank 2 · TkA01G458760 · TK1151
Nucleus0.072
Rank 3 · TkA01G458760 · TK1151
Cytoplasm0.047
Rank 4 · TkA01G458760 · TK1151
Peroxisome0.018
Rank 5 · TkA01G458760 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17177PPR_long156-211 aa
PF23276TPR_24166-201 aa
PF13041PPR_2168-201 aa
PF01535PPR168-190 aa
PF12854PPR_1172-183 aa
PF13812PPR_3180-203 aa
PF17177PPR_long269-413 aa
PF13041PPR_2273-292 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G458760PF17177PPR_long1562115e-65219.5
TkA01G458760PF23276TPR_241662017.9e-0833.0
TkA01G458760PF13041PPR_21682014.1e-0627.5
TkA01G458760PF01535PPR1681909.7e-0523.1
TkA01G458760PF12854PPR_11721830.1612.4
TkA01G458760PF13812PPR_31802030.002218.7
TkA01G458760PF17177PPR_long2694135e-65219.5
TkA01G458760PF13041PPR_22732924.1e-0627.5
TkA01G458760PF01535PPR2752869.7e-0523.1
TkA01G458760PF29070MSC6_N2753490.08412.7
TkA01G458760PF13812PPR_32793370.002218.7
TkA01G458760PF01535PPR2983219.7e-0523.1
TkA01G458760PF23276TPR_243004037.9e-0833.0
TkA01G458760PF13041PPR_23023254.1e-0627.5
TkA01G458760PF12854PPR_13113190.1612.4
TkA01G458760PF12854PPR_13333530.1612.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q66GI4Arabidopsis thalianasp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial48.300%Swiss-ProtMedium
Q680B9Arabidopsis thalianasp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 239.700%Swiss-ProtMedium
F4JKB6Arabidopsis thalianasp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 341.200%Swiss-ProtMedium

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