TkA01G458470 | RubberDandelionOmics

Gene overview

TkA01G458470

Reference: TK1151 Chr: Chr01 Coordinates: 114804031-114807831 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2540 bp · TkA01G458470|TK1151|cDNA

TTTCAAAATCAAAAAAGCCCCCTTCAACACTCAAACACAACTCTCCACACCAATCTCAATCCCAACAACCATACCACCTCCATTACAATTTACACCTTCTCTCAGGTTGCAGATTGGGTTTCTCAAAGATCTGATTGTCCACCTTCTTTTGGATTTTACATGAACACAGTTGGAAGAGTAGGGATGCAGAGATCTGGGTCCAACGGAGGACATCAACATCAGCGTCAATACCCCTCCTCCGATAACTTCATCGACACTAA...

CDS

Download CDS FASTA

2310 bp · TkA01G458470|TK1151|CDS

TTTCAAAATCAAAAAAGCCCCCTTCAACACTCAAACACAACTCTCCACACCAATCTCAATCCCAACAACCATACCACCTCCATTACAATTTACACCTTCTCTCAGGTTGCAGATTGGGTTTCTCAAAGATCTGATTGTCCACCTTCTTTTGGATTTTACATGAACACAGTTGGAAGAGTAGGGATGCAGAGATCTGGGTCCAACGGAGGACATCAACATCAGCGTCAATACCCCTCCTCCGATAACTTCATCGACACTAA...

Protein

Download Protein FASTA

769 aa · TkA01G458470|TK1151|PROTEIN

FQNQKSPLQHSNTTLHTNLNPNNHTTSITIYTFSQVADWVSQRSDCPPSFGFYMNTVGRVGMQRSGSNGGHQHQRQYPSSDNFIDTNFNNKWLQSAGLHHLYSSNPNLPPLQDFGFYGNNNDVENSRINRNSQKNAEALTPGSRSSSFTKYGGMEQVPPSDFSPGLLDLHSLDTELLTEVHSENNLNLLNQPLYGEDPDDVNAHSLANKFANISCGPTETNNLKSSLADKEKASNVAKIKVVVRKRPLNKKELAKKEEDI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G458470`
TK1151 ID	TkA01G458470
OH-1004 ID	LXL04_002088
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	61.000
Protein coverage (%)	TK1151 92.848 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G458470

Location Chr01:114804031-114807831 (-)

Description Similar to KIN13B: Kinesin-like protein KIN-13B

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16060`	Acts redundantly with KIN13A to modulate cell wall synthesis and cell expansion via the THE1 pathway.	Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627
`At3g16630`	Internal motor kinesin involved in trichome morphogenesis.	An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis.2005 · DOI: 10.1091/mbc.e04-05-0400 AtKinesin-13A is located on Golgi-associated vesicle and involved in vesicle formation/budding in Arabidopsis root-cap peripheral cells.2009 · DOI: 10.1186/1471-2229-9-138 Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns.2013 · DOI: 10.1105/tpc.113.117853 Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0625200`	Kinesin-like protein KIN-13B.	No verified direct reference in this release
`Os05g0154700`	Kinesin-like protein KIN-13A.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0007019 microtubule depolymerization Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0090058 metaxylem development Biological Process

GO:1903338 regulation of cell wall organization or biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005795 Golgi stack Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009531 secondary cell wall Cellular Component

GO:0043231 intracellular membrane-bounded organelle Cellular Component

GO:0003777 microtubule motor activity Molecular Function

KEGG gene cross-reference

ath:AT3G16060

ath:AT3G16630

dosa:Os05g0154700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.652

Rank 1 · TkA01G458470 · TK1151

Nucleus0.286

Rank 2 · TkA01G458470 · TK1151

Cell membrane0.117

Rank 3 · TkA01G458470 · TK1151

Lysosome / Vacuole0.064

Rank 4 · TkA01G458470 · TK1151

Golgi apparatus0.062

Rank 5 · TkA01G458470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796Microtub_bd238-381 aa

PF00225Kinesin244-562 aa

PF01935DUF87273-288 aa

PF00270DEAD322-435 aa

PF01935DUF87328-340 aa

PF05791Bacillus_HBL672-757 aa

PF01935DUF87678-759 aa

PF20302HisK-N-like687-757 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G458470	`PF16796`	Microtub_bd	238	381	3.4e-14	53.8
TkA01G458470	`PF00225`	Kinesin	244	562	1.1e-99	334.3
TkA01G458470	`PF01935`	DUF87	273	288	0.22	12.3
TkA01G458470	`PF00270`	DEAD	322	435	0.16	12.4
TkA01G458470	`PF01935`	DUF87	328	340	0.22	12.3
TkA01G458470	`PF05791`	Bacillus_HBL	672	757	0.096	13.2
TkA01G458470	`PF01935`	DUF87	678	759	0.22	12.3
TkA01G458470	`PF20302`	HisK-N-like	687	757	0.49	11.4
TkA01G458470	`PF00270`	DEAD	691	736	0.16	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q940Y8`	Arabidopsis thaliana	sp\|Q940Y8\|KN13B_ARATH Kinesin-like protein KIN-13B	61.700%	Swiss-Prot	High
`Q940B8`	Arabidopsis thaliana	sp\|Q940B8\|KN13A_ARATH Kinesin-like protein KIN-13A	48.100%	Swiss-Prot	Medium
`B9EY52`	Oryza sativa subsp. japonica	sp\|B9EY52\|KN13B_ORYSJ Kinesin-like protein KIN-13B	63.200%	Swiss-Prot	High
`B9FMJ3`	Oryza sativa subsp. japonica	sp\|B9FMJ3\|KN13A_ORYSJ Kinesin-like protein KIN-13A	52.800%	Swiss-Prot	High

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