LXL04_002088 | RubberDandelionOmics

Gene overview

LXL04_002088

Reference: OH-1004 Chr: Chr01 Coordinates: 41581114-41584277 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2139 bp · LXL04_002088|LXL04_002088|OH1004|cDNA

ATGAATGCGGTGGGAAGACACGGACAAAGATCCGGTTCATCTGGAGCTCATCATCAGCGTCAGTACTCCGATAACTTCTTGGAAGTGACTTCTTCCTCATCTAATGGCCGATGGCTTCAATCTGCTGGTCTTCAGCACCTGCAACAACCATCCTCAAACACTTCTTCTCAGGACTTTGGTTACTATGGTGTTGGTGGAGGAGGCCAAGGTCCGAGAATGTATAACAATAACAGGAATATTAGTACGCAGAGGTCTCTAAG...

CDS

Download CDS FASTA

2139 bp · LXL04_002088|LXL04_002088|OH1004|CDS

ATGAATGCGGTGGGAAGACACGGACAAAGATCCGGTTCATCTGGAGCTCATCATCAGCGTCAGTACTCCGATAACTTCTTGGAAGTGACTTCTTCCTCATCTAATGGCCGATGGCTTCAATCTGCTGGTCTTCAGCACCTGCAACAACCATCCTCAAACACTTCTTCTCAGGACTTTGGTTACTATGGTGTTGGTGGAGGAGGCCAAGGTCCGAGAATGTATAACAATAACAGGAATATTAGTACGCAGAGGTCTCTAAG...

Protein

Download Protein FASTA

712 aa · LXL04_002088|LXL04_002088|OH1004|PROTEIN

MNAVGRHGQRSGSSGAHHQRQYSDNFLEVTSSSSNGRWLQSAGLQHLQQPSSNTSSQDFGYYGVGGGGQGPRMYNNNRNISTQRSLSGGSDLFSEPLTPPARQKKHGGSADDPNGFSPGLLDLHSFDTELISEVPAVPMYNNSTRDRSFDDAEPYFGNSKQPSKARGLPDNNLLKSFAPEKEKASSVAKIKVVVRKRPLNKKELAKNEEDIITTETQSSSLTVHETKLKVDLTEYMEKHEFVFDAVLNEEVSNDEVYRET...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002088`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002088

Location Chr01:41581114-41584277 (+)

Description Similar to KIN13B: Kinesin-like protein KIN-13B

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g16060`	Acts redundantly with KIN13A to modulate cell wall synthesis and cell expansion via the THE1 pathway.	Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627
`At3g16630`	Internal motor kinesin involved in trichome morphogenesis.	An internal motor kinesin is associated with the Golgi apparatus and plays a role in trichome morphogenesis in Arabidopsis.2005 · DOI: 10.1091/mbc.e04-05-0400 AtKinesin-13A is located on Golgi-associated vesicle and involved in vesicle formation/budding in Arabidopsis root-cap peripheral cells.2009 · DOI: 10.1186/1471-2229-9-138 Rho of plant GTPase signaling regulates the behavior of Arabidopsis kinesin-13A to establish secondary cell wall patterns.2013 · DOI: 10.1105/tpc.113.117853 Atkinesin-13A modulates cell-wall synthesis and cell expansion in Arabidopsis thaliana via the THESEUS1 pathway.2014 · DOI: 10.1371/journal.pgen.1004627

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0625200`	Kinesin-like protein KIN-13B.	No verified direct reference in this release
`Os05g0154700`	Kinesin-like protein KIN-13A.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002088 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0007018 microtubule-based movement Biological Process

GO:0007019 microtubule depolymerization Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010090 trichome morphogenesis Biological Process

GO:0090058 metaxylem development Biological Process

GO:1903338 regulation of cell wall organization or biogenesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0005795 Golgi stack Cellular Component

GO:0005874 microtubule Cellular Component

GO:0009531 secondary cell wall Cellular Component

GO:0043231 intracellular membrane-bounded organelle Cellular Component

GO:0003777 microtubule motor activity Molecular Function

KEGG gene cross-reference

ath:AT3G16060

ath:AT3G16630

dosa:Os05g0154700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.687

Rank 1 · LXL04_002088 · OH-1004

Nucleus0.258

Rank 2 · LXL04_002088 · OH-1004

Cell membrane0.165

Rank 3 · LXL04_002088 · OH-1004

Golgi apparatus0.055

Rank 4 · LXL04_002088 · OH-1004

Lysosome / Vacuole0.049

Rank 5 · LXL04_002088 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16796.12Microtub_bd189-332 aa

PF00225.30Kinesin195-513 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002088	`PF16796.12`	Microtub_bd	189	332	3.4e-14	53.8
LXL04_002088	`PF00225.30`	Kinesin	195	513	1.2e-99	334.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q940Y8`	Arabidopsis thaliana	Kinesin-like protein KIN-13B	65.278%	Swiss-Prot	strong database homology
`Q940B8`	Arabidopsis thaliana	Kinesin-like protein KIN-13A	60.297%	Swiss-Prot	strong database homology
`B9EY52`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-13B	64.921%	Swiss-Prot	strong database homology
`B9FMJ3`	Oryza sativa subsp. japonica	Kinesin-like protein KIN-13A	58.652%	Swiss-Prot	moderate database homology

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