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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G456890
Reference: TK1151 Chr: Chr01 Coordinates: 114407352-114409209 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

780 bp · TkA01G456890|TK1151|cDNA

ATGATGCCATCAAGCGACCGTAGAAGCTTACCGGTGTCGGATCCTCCTCCTCAGCAAAAAGGCGGCGCCGACGAACAGAGGCTCTTCAAAGGATCCACTATGACCTCTGGCGGTGCTTATGATGTCGTCTCTTACATGTCTTACGCTGGTATTAAATCAAAGTGGATGGATAAAGAAGGAAAGACTCCTCTCATATTGGCTTCCATGAGTCCACAGCTATATGATGTTGCAAAAACCCTAATAAAATTGGGTGCCAATGT...

CDS

Download CDS FASTA

780 bp · TkA01G456890|TK1151|CDS

ATGATGCCATCAAGCGACCGTAGAAGCTTACCGGTGTCGGATCCTCCTCCTCAGCAAAAAGGCGGCGCCGACGAACAGAGGCTCTTCAAAGGATCCACTATGACCTCTGGCGGTGCTTATGATGTCGTCTCTTACATGTCTTACGCTGGTATTAAATCAAAGTGGATGGATAAAGAAGGAAAGACTCCTCTCATATTGGCTTCCATGAGTCCACAGCTATATGATGTTGCAAAAACCCTAATAAAATTGGGTGCCAATGT...

Protein

Download Protein FASTA

259 aa · TkA01G456890|TK1151|PROTEIN

MMPSSDRRSLPVSDPPPQQKGGADEQRLFKGSTMTSGGAYDVVSYMSYAGIKSKWMDKEGKTPLILASMSPQLYDVAKTLIKLGANVVNAYRPGRHAGTPLHHAAKRGLEQMVKLLLSHGANALVMNDDCQTALDVARLKGYSNVERAIENHICLFSRWLQELYGPGFLELLAPQLLSRKVWVVILPCGARKLTKPFKLELAIYSGLQDAKPQSLLPLWKVNMDEPNFNQPDLISQDTGEGGDVFCSLKLGKFIELKSD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G456890
TK1151 IDTkA01G456890
OH-1004 IDLXL04_010970
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)89.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G456890
LocationChr01:114407352-114409209 (+)
DescriptionSimilar to XBAT35: Putative E3 ubiquitin-protein ligase XBAT35
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g23280 No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release
At4g14365 No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0446100 Probable E3 ubiquitin-protein ligase XBOS34. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010970 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002237 response to molecule of bacterial origin Biological Process
GO:0009609 response to symbiotic bacterium Biological Process
GO:0009610 response to symbiotic fungus Biological Process
GO:0009877 nodulation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0035556 intracellular signal transduction Biological Process
GO:0036377 arbuscular mycorrhizal association Biological Process
GO:0043067 regulation of programmed cell death Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT3G23280
ath:AT4G14365
dosa:Os07g0446100
hsa:92591
mtr:25495843
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.452
Rank 1 · TkA01G456890 · TK1151
Nucleus0.415
Rank 2 · TkA01G456890 · TK1151
Mitochondrion0.109
Rank 3 · TkA01G456890 · TK1151
Cell membrane0.109
Rank 4 · TkA01G456890 · TK1151
Endoplasmic reticulum0.075
Rank 5 · TkA01G456890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796Ank_237-87 aa
PF13637Ank_440-81 aa
PF13857Ank_558-67 aa
PF00023Ank60-89 aa
PF13606Ank_360-87 aa
PF13637Ank_475-117 aa
PF13857Ank_591-137 aa
PF12796Ank_298-145 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G456890PF12796Ank_237878.5e-1349.4
TkA01G456890PF13637Ank_440812.6e-0834.6
TkA01G456890PF13857Ank_558675e-0730.7
TkA01G456890PF00023Ank60897.4e-1348.7
TkA01G456890PF13606Ank_360871.1e-0732.2
TkA01G456890PF13637Ank_4751172.6e-0834.6
TkA01G456890PF13857Ank_5911375e-0730.7
TkA01G456890PF12796Ank_2981458.5e-1349.4
TkA01G456890PF00023Ank991277.4e-1348.7
TkA01G456890PF13606Ank_3991231.1e-0732.2
TkA01G456890PF13637Ank_41011412.6e-0834.6
TkA01G456890PF00023Ank1311427.4e-1348.7
TkA01G456890PF13606Ank_31311511.1e-0732.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q4FE47Arabidopsis thalianasp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT3567.700%Swiss-ProtHigh
Q9FPH0Arabidopsis thalianasp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT3456.000%Swiss-ProtHigh
Q7XI08Oryza sativa subsp. japonicasp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS3459.300%Swiss-ProtHigh

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