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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G452880
Reference: TK1151 Chr: Chr01 Coordinates: 113329892-113331003 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

420 bp · TkA01G452880|TK1151|cDNA

ATGTTTGCTCTTGAATCGGAGAAGGCTTGTAGCGTGGCTTCGAGGATCGGTGTTTCTACGGGCCAGTGGTCCAGACGACGAACAATTAGAGACAATAAAGAGCTTATAGAAGAGAACAACATCAAAGACATGCTGGAGGTTGTTTACATCGATAGTACTAGAGGAGATAAGTGGTGCCTCCTTAAAGCCCCAAAGAGCATTCTTTCTACTGCTTGGATCAGGGACAGATTGGAGATGCTAAAGAGTATGGGAACCACATA...

CDS

Download CDS FASTA

420 bp · TkA01G452880|TK1151|CDS

ATGTTTGCTCTTGAATCGGAGAAGGCTTGTAGCGTGGCTTCGAGGATCGGTGTTTCTACGGGCCAGTGGTCCAGACGACGAACAATTAGAGACAATAAAGAGCTTATAGAAGAGAACAACATCAAAGACATGCTGGAGGTTGTTTACATCGATAGTACTAGAGGAGATAAGTGGTGCCTCCTTAAAGCCCCAAAGAGCATTCTTTCTACTGCTTGGATCAGGGACAGATTGGAGATGCTAAAGAGTATGGGAACCACATA...

Protein

Download Protein FASTA

139 aa · TkA01G452880|TK1151|PROTEIN

MFALESEKACSVASRIGVSTGQWSRRRTIRDNKELIEENNIKDMLEVVYIDSTRGDKWCLLKAPKSILSTAWIRDRLEMLKSMGTTYKTTGINGSRSKRTSSFGESNMTVLPLVCLAKVTIPCPSTTNASLLLTYYSIC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G452880
TK1151 IDTkA01G452880
OH-1004 IDLXL04_034256
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)69.300
Protein coverage (%)TK1151 63.309 / OH-1004 14.058
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G452880
LocationChr01:113329892-113331003 (-)
DescriptionSimilar to TIM50: Mitochondrial import inner membrane translocase subunit TIM50
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_034256 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006886 intracellular protein transport Biological Process
GO:0015031 protein transport Biological Process
GO:0030150 protein import into mitochondrial matrix Biological Process
GO:0045039 protein insertion into mitochondrial inner membrane Biological Process
GO:0046902 regulation of mitochondrial membrane permeability Biological Process
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex Cellular Component
GO:0008320 protein transmembrane transporter activity Molecular Function
GO:0030943 mitochondrion targeting sequence binding Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G55900
cgr:2888680
cnb:CNBA4980
cne:CNA05150
sce:YPL063W
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.413
Rank 1 · TkA01G452880 · TK1151
Nucleus0.408
Rank 2 · TkA01G452880 · TK1151
Mitochondrion0.108
Rank 3 · TkA01G452880 · TK1151
Cell membrane0.098
Rank 4 · TkA01G452880 · TK1151
Endoplasmic reticulum0.061
Rank 5 · TkA01G452880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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