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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G390890
Reference: TK1151 Chr: Chr01 Coordinates: 97613434-97615047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1098 bp · TkA01G390890|TK1151|cDNA

TAAAAGGAAAATTCTTAGAACATAAACCCTAGTGTGAATCCCACATCTGTAGCAACCAGCGAGGATACAAAAACCCTAGCGTGAATCCTGCTCTCCGGCACCCATTTATACTTTATCTGAAATTATCCCTCTTGCTTCGCCAATCTTCAGAGTCACATTATTGTTAGTTTAAACTATTAAGATAATGGTGGCCCCGCTCTACAAAATAGCCGACTCAGCCATGGGAGAGAACGATGAAGACTTGCACAGTGTAAAAGACA...

CDS

Download CDS FASTA

648 bp · TkA01G390890|TK1151|CDS

ATGAAACTGGATTTCTATGGTTGTTTCAAGCTCCTCAACTATGTAAGATCACAGGTGGGACAAAATCGATGTTGGATCTGTGGAACTACATGTCAGTCTAGGTCAGAACTACAAGATCATCTACATGAACCTTGTATAGAAACCAGTAATCTTCCATGGGACAATGACATGTACCTAAAACCATATATGGAAGAAGATAATTTGCTATATAGTTTTGATGAAGATGAAGAAGTTGATGATGATTCTGAGAAACCAGCTGA...

Protein

Download Protein FASTA

215 aa · TkA01G390890|TK1151|PROTEIN

MKLDFYGCFKLLNYVRSQVGQNRCWICGTTCQSRSELQDHLHEPCIETSNLPWDNDMYLKPYMEEDNLLYSFDEDEEVDDDSEKPADEEDMLKNLKLSIEENVASSSDISTDKKSNNSSVDCEIVLVNKNYFGSYSSFGIHREMISDKVRTDAYRQAIVDNPSLMKGAVVLDVGCGTGILSLFAAQAGASIVNAVEASDKMASVASQVISIFYFM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G390890
TK1151 IDTkA01G390890
OH-1004 IDLXL04_010985
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)60.600
Protein coverage (%)TK1151 33.023 / OH-1004 17.233
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G390890
LocationChr01:97613434-97615047 (+)
DescriptionSimilar to PRMT6: Probable protein arginine N-methyltransferase 6
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g12270 Protein-arginine N-methyltransferase that catalyzes both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target proteins, and therefore falls into the group of type I methyltransferases. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0640000 Protein-arginine N-methyltransferase that catalyzes both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target proteins, and therefore falls into the group of type I methyltransferases. No verified direct reference in this release
UniProt: A2YP56 Protein-arginine N-methyltransferase that catalyzes both the monomethylation and asymmetric dimethylation of the guanidino nitrogens of arginine residues in target proteins, and therefore falls into the group of type I methyltransferases. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010985 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006338 chromatin remodeling Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0032259 methylation Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0016274 protein-arginine N-methyltransferase activity Molecular Function
GO:0042054 histone methyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G20020
dosa:Os10g0489100
osa:9268644
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.732
Rank 1 · TkA01G390890 · TK1151
Cytoplasm0.383
Rank 2 · TkA01G390890 · TK1151
Mitochondrion0.047
Rank 3 · TkA01G390890 · TK1151
Cell membrane0.032
Rank 4 · TkA01G390890 · TK1151
Endoplasmic reticulum0.024
Rank 5 · TkA01G390890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21137ANM3_C2H2_Zf2-19 aa
PF12756zf-C2H2_210-43 aa
PF06467zf-FCS21-38 aa
PF23107Zf-C2H2_ZNF451_C23-43 aa
PF00096zf-C2H223-41 aa
PF12874zf-met24-41 aa
PF21137ANM3_C2H2_Zf49-61 aa
PF08003Methyltransf_995-198 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G390890PF21137ANM3_C2H2_Zf2191.7e-0834.9
TkA01G390890PF12756zf-C2H2_210430.001319.7
TkA01G390890PF06467zf-FCS21380.07513.6
TkA01G390890PF23107Zf-C2H2_ZNF451_C23430.02915.7
TkA01G390890PF00096zf-C2H223410.05114.8
TkA01G390890PF12874zf-met24410.3212.1
TkA01G390890PF21137ANM3_C2H2_Zf49611.7e-0834.9
TkA01G390890PF08003Methyltransf_9951980.00118.8
TkA01G390890PF08123DOT11061350.09812.9
TkA01G390890PF03848TehB1431990.004917.0
TkA01G390890PF02353CMAS1562040.00516.9
TkA01G390890PF08123DOT11562110.09812.9
TkA01G390890PF01135PCMT1602060.04514.2
TkA01G390890PF03602Cons_hypoth951612060.1412.5
TkA01G390890PF13489Methyltransf_231642030.0003121.2
TkA01G390890PF01728FtsJ1641970.07113.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q0WVD6Arabidopsis thalianasp|Q0WVD6|ANM3_ARATH Probable protein arginine N-methyltransferase 346.300%Swiss-ProtMedium
A3BMN9Oryza sativa subsp. japonicasp|A3BMN9|ANM3_ORYSJ Probable protein arginine N-methyltransferase 346.700%Swiss-ProtMedium
A2YP56Oryza sativa subsp. indicasp|A2YP56|ANM3_ORYSI Probable protein arginine N-methyltransferase 346.700%Swiss-ProtMedium

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