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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G383590
Reference: TK1151 Chr: Chr01 Coordinates: 95728923-95730967 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1050 bp · TkA01G383590|TK1151|cDNA

ATGAACAAATCCGGCCGGCCAAAGCCATCAGAACATGAAGATGGGGTTGATTTTATCAGCAACTTGCCAGATCCTATTCTTCATTTGATTCTCTCGCGTGTTCCATCTTCTGAAGAAATAACCCGAACGAGCATTTTGTCCAGACGATGGAGTATGTCGATAGTAGAGAGGTGGATTCACGCAGCTGTTATGAGAAACGTCAAAAAACTTGACTTGAGTTTTTCCCCCAAGGAGGAGTCTGAGAACTTGGTGATACCCGA...

CDS

Download CDS FASTA

1050 bp · TkA01G383590|TK1151|CDS

ATGAACAAATCCGGCCGGCCAAAGCCATCAGAACATGAAGATGGGGTTGATTTTATCAGCAACTTGCCAGATCCTATTCTTCATTTGATTCTCTCGCGTGTTCCATCTTCTGAAGAAATAACCCGAACGAGCATTTTGTCCAGACGATGGAGTATGTCGATAGTAGAGAGGTGGATTCACGCAGCTGTTATGAGAAACGTCAAAAAACTTGACTTGAGTTTTTCCCCCAAGGAGGAGTCTGAGAACTTGGTGATACCCGA...

Protein

Download Protein FASTA

349 aa · TkA01G383590|TK1151|PROTEIN

MNKSGRPKPSEHEDGVDFISNLPDPILHLILSRVPSSEEITRTSILSRRWSMSIVERWIHAAVMRNVKKLDLSFSPKEESENLVIPDCLVTCASLEVMGFPALRVLYLGYIELFDSDSVEDFLESCPLLEDLTLDEVILDDKIEYLCISCPKLKKLIFSSYSAGCLFISSPELMCMTVIGCVDIICEDLSSLKEAIIGLEPAQTCELFPGISDLESLEIELYFLYEALEGARVPALPNLKMLVLNATEVDFSVKYLKKII...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G383590
TK1151 IDTkA01G383590
OH-1004 IDLXL04_003234
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)68.000
Protein coverage (%)TK1151 99.427 / OH-1004 91.410
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G383590
LocationChr01:95728923-95730967 (-)
DescriptionSimilar to At4g10400: FBD-associated F-box protein At4g10400
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_003234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G66310
ath:AT4G10400
ath:AT4G14103
ath:AT5G02700
ath:AT5G56370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.832
Rank 1 · TkA01G383590 · TK1151
Cytoplasm0.198
Rank 2 · TkA01G383590 · TK1151
Cell membrane0.059
Rank 3 · TkA01G383590 · TK1151
Endoplasmic reticulum0.050
Rank 4 · TkA01G383590 · TK1151
Plastid0.019
Rank 5 · TkA01G383590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box19-52 aa
PF12937F-box-like19-54 aa
PF23622LRR_At1g61320_AtMIF151-279 aa
PF29594LRR_SKP252-97 aa
PF24758LRR_At5g5637055-197 aa
PF12799LRR_466-73 aa
PF12799LRR_486-110 aa
PF12799LRR_4102-134 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G383590PF00646F-box19520.0001422.3
TkA01G383590PF12937F-box-like19540.001119.4
TkA01G383590PF23622LRR_At1g61320_AtMIF1512790.0005620.1
TkA01G383590PF29594LRR_SKP252970.007816.2
TkA01G383590PF24758LRR_At5g56370551973.3e-1866.9
TkA01G383590PF12799LRR_466730.00318.5
TkA01G383590PF12799LRR_4861100.00318.5
TkA01G383590PF12799LRR_41021340.00318.5
TkA01G383590PF07723LRR_21031270.001719.6
TkA01G383590PF29594LRR_SKP21141760.007816.2
TkA01G383590PF07723LRR_21291420.001719.6
TkA01G383590PF00646F-box1481590.0001422.3
TkA01G383590PF12799LRR_41491570.00318.5
TkA01G383590PF24758LRR_At5g563702112753.3e-1866.9
TkA01G383590PF12799LRR_42132170.00318.5
TkA01G383590PF12799LRR_42352470.00318.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

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